Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02049 ATGGAAGAAGCACTTCACCGTCTCAACGGAACTTCCCCAACAATAATCCCAGACATACTCGAAACAAAAAAACCAACAACAAAAAGAACATCACGCGAAAACACAACAACAACAACAACCACCGGTAACGGCGGCGCACTTCGTTACCGTGGAGTACGCCGTCGACCGTGGGGTCGTTACGCAGCTGAAATAAGAGATCCACAGTCAAAAGAACGCCGTTGGCTTGGTACTTTTGATACAGCTGAAGAAGCTGCTTGTGCTTATGACTGCGCCGCACGTGCCATGCGTGGTATCAAAGCTCGCACGAATTTCGTTTACCCAACTTCTCCATCACCACACATAACCACCACTTTCCCTTCTTTCAACTTCCCTAAACATTCTCAAACTAACCGCCACGTGTCAACTTGTGGTTGGTCTGAACAACAACAACAACAACAACCACATTCTGCTGCTGCTGCTGTTGATTTTTCTCATAATAACAGAAACCCTTCATCTTCTTCTTCTTCTTCTTCACTTGACATGCTTCTGTTTCGTGATTTCACCACCTCTTCAAATCATCACACTCACGACAATTTTCCTTATTCTCACAACAACAACAATGGTCGTTCAAATTCTAGCTCTGCTTTTTTACCAGGTTGTTGTTTGGTGAATTCTTGTGGAGGGGGTGCAAATAGCAACATGAACAACAATGCTTTTGGTGCTGTAGATGGGAATAATGGGAACATAGTTTCTTCTGCTGATGAAGATTCGGATTTTTTTCCTAAAGAATCTTCTGATTCTGGTTTATTGGAAGAGATTGTGAGTAAATTTCTACCTAAACCTAAGCAAGAGATTAAAACTGGGATTTTGCCAAAGACAGGATCTTTATCTGACCCTTTTGTTTCAACTGCACCTGTGTATGATCACATGCTTGAGATGAAAAAAGGGATTACAAAGAATGAATTTTTAGGTGTTGGGTATGCTCAAAATGGTTTTAATATGCAGCAGTATGAAAATTTCAATAATGGGTTTAGTACTTTTCAGTCTGTGCCTGTTGGGAATGAACAAATTATGGTGAATCATGCTGAGAATTATGTTATTCAGTATCAAGAGTTTCTTGATGCTTTTGCACTCAGGATGCAAAATGCTTAG 1131 0.4085 MEEALHRLNGTSPTIIPDILETKKPTTKRTSRENTTTTTTTGNGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVYPTSPSPHITTTFPSFNFPKHSQTNRHVSTCGWSEQQQQQQPHSAAAAVDFSHNNRNPSSSSSSSSLDMLLFRDFTTSSNHHTHDNFPYSHNNNNGRSNSSSAFLPGCCLVNSCGGGANSNMNNNAFGAVDGNNGNIVSSADEDSDFFPKESSDSGLLEEIVSKFLPKPKQEIKTGILPKTGSLSDPFVSTAPVYDHMLEMKKGITKNEFLGVGYAQNGFNMQQYENFNNGFSTFQSVPVGNEQIMVNHAENYVIQYQEFLDAFALRMQNA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02049 376 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Trre9g02049 376 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Trre9g02049 376 MobiDBLite consensus disorder prediction 1 47 - -
Trre9g02049 376 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Trre9g02049 376 MobiDBLite consensus disorder prediction 31 45 - -
Trre9g02049 376 MobiDBLite consensus disorder prediction 131 171 - -
Trre9g02049 376 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Trre9g02049 376 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Trre9g02049 376 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Trre9g02049 376 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 197 - -
Trre9g02049 376 FunFam Ethylene-responsive transcription factor 2 48 106 - -
Trre9g02049 376 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Trre9g02049 376 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02049 Trre-Chr9 20778269 20779399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02049 1 341 AP2-EREBP Transcription Factor Family AT1G24590 33.333 9.40e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre9g02049 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02049 - - psat:127121366 432.95