Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02045 ATGGGTTGTTTGGCTACATCATTTGTTCTTTCTAATCAATTGATTCCATTTTCTACAACTATCGCTAATTCTACCACAAACTCCAAATTGGAAGCCAGTTTACGTAAAGTATACAAAAATACAACCAAAGAAAAATTATGTCTGTCTTTCTTTAGGGATAATTATGAAGTTAGGATTGGGAGGAATTGTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGAAAACCCAACAAGAACATGATGGAACTTGGGAAGATGGAACTTGGGAAGAACCAGATATTGGTAGTGACAGTGAGGATGGAAATGAAGAAGAAGACGAGAGCCTTGACGAAGAGACAAAGGCTGGTGTTAATATTACTTCACAGGATGATGAGTATGAGCGTATTAAGAAAGAGGTTGAACAGCTTTTGGAGCCAGAAGAAATAGAAATATTGCAACAGAATGTGACTCCTAACTTGGAGAAAATATCATCCAAAAAATGGGGCCTGCTGCACTCCCTTGCCTTATCATTGCAGATTTATAGCATGGACAAGCTTGTTGAAAATGGTTATGACATTGATTTCCTTAATAAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAGGATAAGGATGGGGCTACTCCACTCCATTATGCAGTTCAAGTTGGCGCAAAACAAACTGTGAAATTATTGATGAAATACAATGTTGATGTCAATGTTGCAGATAATGAAGGTTGGACCCCATTGCACGTTGCCATTCAAAGCAGAAACAGAGATATTGCGAAAATTTTGATAGGTAACGGCGCAGATAGGTTGATAAAAAATAAGGCTGGAAAAACAGCACTGGATCTAAGCTTATGTTATGGGAAGGACTTCATGTCTTATGATCTTGCTAGATTAGTGAAGGTAGCTCCAACTAACAGAGCTCTATAA 975 0.3805 MGCLATSFVLSNQLIPFSTTIANSTTNSKLEASLRKVYKNTTKEKLCLSFFRDNYEVRIGRNCAIKSSRGVSSLKTQQEHDGTWEDGTWEEPDIGSDSEDGNEEEDESLDEETKAGVNITSQDDEYERIKKEVEQLLEPEEIEILQQNVTPNLEKISSKKWGLLHSLALSLQIYSMDKLVENGYDIDFLNKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLMKYNVDVNVADNEGWTPLHVAIQSRNRDIAKILIGNGADRLIKNKAGKTALDLSLCYGKDFMSYDLARLVKVAPTNRAL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02045 324 ProSiteProfiles Ankyrin repeat profile. 192 224 IPR002110 GO:0005515
Trre9g02045 324 ProSiteProfiles Ankyrin repeat region circular profile. 258 284 - -
Trre9g02045 324 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 123 314 - -
Trre9g02045 324 MobiDBLite consensus disorder prediction 88 111 - -
Trre9g02045 324 Pfam Ankyrin repeats (many copies) 261 298 IPR002110 GO:0005515
Trre9g02045 324 ProSiteProfiles Ankyrin repeat region circular profile. 192 224 - -
Trre9g02045 324 Gene3D - 226 305 IPR036770 -
Trre9g02045 324 MobiDBLite consensus disorder prediction 70 114 - -
Trre9g02045 324 Pfam Ankyrin repeats (3 copies) 174 256 IPR002110 GO:0005515
Trre9g02045 324 SUPERFAMILY Ankyrin repeat 147 303 IPR036770 -
Trre9g02045 324 Gene3D - 124 225 IPR036770 -
Trre9g02045 324 SMART ANK_2a 192 221 IPR002110 GO:0005515
Trre9g02045 324 SMART ANK_2a 225 254 IPR002110 GO:0005515
Trre9g02045 324 SMART ANK_2a 258 287 IPR002110 GO:0005515
Trre9g02045 324 SMART ANK_2a 159 188 IPR002110 GO:0005515
Trre9g02045 324 ProSiteProfiles Ankyrin repeat region circular profile. 225 257 - -
Trre9g02045 324 ProSiteProfiles Ankyrin repeat profile. 225 257 IPR002110 GO:0005515
Trre9g02045 324 ProSiteProfiles Ankyrin repeat profile. 258 290 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02045 Trre-Chr9 20740327 20743032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02045 176 284 Ion Channels AT2G25600 27.143 6.89e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02045 - - lja:Lj0g3v0067589.2 385.571