Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02044 ATGGGAAAGAAGGGATGGTTTAACATTGTAAAGAAGATCTTTACAAGGGACACACATTCCACACAAGAGAAGAAGGAGAAAAGAAGAAAGTGGGTATTTGGAAGGCTAAAAAACAAGAGATTTCTGTCAATTGAAGCACCACCAACATTCAAAGGAACAAATTTATGTGAATCTGAAGAAGAACACAGTAAGCATGCTTTATCAGTTGCAACGGCTGCAGCTGAAGCTGCTCTTACTGCTGCTCAGGTTGCAGTTGAGGTTGTTAGGCTCCAATCTGCTCATCAATTTAAGCGAAAACCAGAACAAGTTAAAACCAACTGCGAGTGGAAGATTGAAGAATCTTCAGCCATCAAAATTCAAACAGCATTTAGAGGTTACCTTGCACGGAAAGCTTTGAGGGCATTGAAGGGAATAGTGATGCTTCAATCTATCATTCGTGGTAGAGCTGTAAGACGGCAAGCTATGAGTACTCTTAAATGCTTGCAGTCCATTGTGAGTATCCAGTCTCAGGTCATTGCAAGGAAACTCCAAATGGTTGAAGGAAGGTTTGATTATGGTGAATATGAAGAGATGCAAGATTCAAGAGACAAGATCATAAGGATGGACTCAAACAGTGAGAGAAAGTTGGATAGCAATATTTTAGTGAAGAAAGAAGTCAATTCCCCTAGCATGAGCAAGAAAGAATTGTCTCTTAGGAATGAAGGAGTAAAAGAATACTCATATCACCATAGAATATCAACTGAATCGGAAAGAAACAAAATAAATGGAAGAGGGAGGTATTGGATGGACACACAGCATTGTAAGAGTAAAGAACTAGAAGATCTAGACTCGGTTTTCAGCTCACATTGTAGAGTTGTGGAAGATTGTGAAAGTAGACAACAAAAGCTTAGACATATTCAGACACATAATGAAGTTGAATGGTTAGATTCTCGGCCGATACTGTCTTCAAGAAACTCTTTGCCCCAAATGAGCCATAATTTAGATGGAGAATATCACTCATTTCCGAGCTCTCCTGCAATTCCGACATATATGGTTGCAACGAAATCAACACAAGCAAAAGTAAGATCAACAAGCACACCAAAAACAAGGATAGTAAGGAATTAG 1104 0.3904 MGKKGWFNIVKKIFTRDTHSTQEKKEKRRKWVFGRLKNKRFLSIEAPPTFKGTNLCESEEEHSKHALSVATAAAEAALTAAQVAVEVVRLQSAHQFKRKPEQVKTNCEWKIEESSAIKIQTAFRGYLARKALRALKGIVMLQSIIRGRAVRRQAMSTLKCLQSIVSIQSQVIARKLQMVEGRFDYGEYEEMQDSRDKIIRMDSNSERKLDSNILVKKEVNSPSMSKKELSLRNEGVKEYSYHHRISTESERNKINGRGRYWMDTQHCKSKELEDLDSVFSSHCRVVEDCESRQQKLRHIQTHNEVEWLDSRPILSSRNSLPQMSHNLDGEYHSFPSSPAIPTYMVATKSTQAKVRSTSTPKTRIVRN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02044 367 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515
Trre9g02044 367 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Trre9g02044 367 ProSiteProfiles IQ motif profile. 112 136 IPR000048 GO:0005515
Trre9g02044 367 PANTHER IQ-DOMAIN 5-RELATED 1 363 - -
Trre9g02044 367 SMART iq_5 111 133 IPR000048 GO:0005515
Trre9g02044 367 SMART iq_5 134 155 IPR000048 GO:0005515
Trre9g02044 367 Gene3D - 111 164 - -
Trre9g02044 367 Pfam Protein of unknown function (DUF4005) 321 363 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02044 Trre-Chr9 20736603 20738503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02044 3 363 IQD Protein Family AT5G13460 41.711 7.91e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02044 - - tpra:123883685 626.706