Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02043 ATGGGAAAGAAGGGATGGTTTAACATTGTAAAGAAGATCTTTACAAGGGACACACATTCCACACAAGAGAAGGAGAAAAGAAGAAAGTGGGTATTTGGAAGGCTAAAAAACAAGAGATTTCTGTCAATTGAAGCACCACCAACATTCAAAGGAACAAATTTATGTGAATCTGAAGAAGAACACAGTAAGCATGCTTTATCAGTTGCAACGGCTGCAGCTGAAGCTGCTCTTACTGCTGCTCAGGTTGCAGTTGAGGTTGTTAGGCTCCAATCTGCTCATCAATTTAAGCGAAAACCAGAACAAGTTAAAACCAACTGCGAGTGGAAGATTGAAGAATCTTCAGCCATCAAAATTCAAACAGCATTTAGAGGTTACCTTGCACGGAAAGCTTTGAGGGCATTGAAGGGAATAGTGATGCTTCAATCTATCATTCGTGGTAGAGCTGTAAGACGGCAAGCTATGAGTACTCTTAAATGCTTGCAGTCCATTGTGAGTATCCAGTCTCAGGTCATTGCAAGGAAACTCCAAATGGTTGAAGGAAGGTTTGATTATGGTGAATATGAAGAGATGCAAGATTCAAGAGACAAGATCATAAGGATGGACTCAAACAGTGAGAGAAAGTTGGATAGCAATATTTTAGTGAAGAAAGAAGTCAATTCCCCTAGCATGAGCAAGAAAGAATTGTCTCTTAGGAATGAAGGAGTAAAAGAATACTCATATCACCATAGAATATCAACTGAATCGGAAAGAAACAAAATAAATGGAAGAGGGAGGTATTGGATGGACACACAGCATTGTAAGAGTAAAGAACTAGAAGATCTAGACTCGGTTTTCAGCTCACATTGTAGAGTTGTGGAAGATTGTGAAAGTAGACAACAAAAGCTTAGACATATTCAGACACATAATGAAGTTGAATGGTTAGATTCTCGGCCGATACTGTCTTCAAGAAACTCTTTGCCCCAAATGAGCCATAATTTAGATGGAGAATATCACTCATTTCCGAGCTCTCCTGCAATTCCGACATATATGGTTGCAACGAAATCAACACAAGCAAAAGTAAGATCAACAAGCACACCAAAAACAAGGATAGTAAGGAATTAG 1101 0.3906 MGKKGWFNIVKKIFTRDTHSTQEKEKRRKWVFGRLKNKRFLSIEAPPTFKGTNLCESEEEHSKHALSVATAAAEAALTAAQVAVEVVRLQSAHQFKRKPEQVKTNCEWKIEESSAIKIQTAFRGYLARKALRALKGIVMLQSIIRGRAVRRQAMSTLKCLQSIVSIQSQVIARKLQMVEGRFDYGEYEEMQDSRDKIIRMDSNSERKLDSNILVKKEVNSPSMSKKELSLRNEGVKEYSYHHRISTESERNKINGRGRYWMDTQHCKSKELEDLDSVFSSHCRVVEDCESRQQKLRHIQTHNEVEWLDSRPILSSRNSLPQMSHNLDGEYHSFPSSPAIPTYMVATKSTQAKVRSTSTPKTRIVRN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02043 366 PANTHER IQ-DOMAIN 5-RELATED 1 362 - -
Trre9g02043 366 Pfam Protein of unknown function (DUF4005) 320 362 IPR025064 -
Trre9g02043 366 Gene3D - 111 161 - -
Trre9g02043 366 SMART iq_5 110 132 IPR000048 GO:0005515
Trre9g02043 366 SMART iq_5 133 154 IPR000048 GO:0005515
Trre9g02043 366 ProSiteProfiles IQ motif profile. 111 135 IPR000048 GO:0005515
Trre9g02043 366 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Trre9g02043 366 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02043 Trre-Chr9 20736603 20738503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02043 3 362 IQD Protein Family AT5G13460 41.287 8.15e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02043 - - tpra:123883685 620.157