Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02042 ATGTTCGGACTCTCCCAACCCGCTTCGGATACTCCCAAATCCACCATTAAATTCCTCTGTAGTTATGGCGGCAAAATCCTCCCCCGCTACCCCGACGGCAAACTCCGTTACCTCGGTGGCCATACACGTGTCCTCTCCGTCGATCGCACTATTCAATTTTCCGAACTCCTTTCGAAGCTAGAAGAACTGTGCGGTTCATCCGTGACGCATCTTCGCTGTCAGTTACCCGCCGAAGATCTCGATGCTTTGGTTTCCATTACCTCCGATGAAGATCTCGTCAATCTAACTGAAGAATATGATCGTACAGCGTCGCCACAATTACCGTTGAAGATCAAAGCGTTCATTTCGCCTCCGAGATCTTCGAATAAGGTTTCCAAACCTCCATTACCGACTATATCGAAATCAGCATCTGTTTCTTCCTCATCCTCTGTATCGTCGACATCTTCTTCATCGTCTTACTGTAGCCTTACCGGTGGAGGTTCCAGCCGGAAGTATGTGGCTGAGCCACCCGTAGCTTACCGCTGCATTCATCATATGTCATCTCCAACGGCGAATCATGTCAACATGGAGAGATCTTCCAGGAGGAATATTCCCCTGCAGGGCAACTGCAACCGGTGGCAATAA 624 0.4936 MFGLSQPASDTPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVLSVDRTIQFSELLSKLEELCGSSVTHLRCQLPAEDLDALVSITSDEDLVNLTEEYDRTASPQLPLKIKAFISPPRSSNKVSKPPLPTISKSASVSSSSSVSSTSSSSSYCSLTGGGSSRKYVAEPPVAYRCIHHMSSPTANHVNMERSSRRNIPLQGNCNRWQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02042 207 Gene3D - 34 113 - -
Trre9g02042 207 MobiDBLite consensus disorder prediction 118 153 - -
Trre9g02042 207 CDD PB1_UP2 19 115 - -
Trre9g02042 207 PANTHER OS05G0427100 PROTEIN-RELATED 11 181 - -
Trre9g02042 207 Pfam PB1 domain 32 110 IPR000270 GO:0005515
Trre9g02042 207 MobiDBLite consensus disorder prediction 187 207 - -
Trre9g02042 207 SUPERFAMILY CAD & PB1 domains 32 123 - -
Trre9g02042 207 SMART PB1_new 30 118 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02042 Trre-Chr9 20719438 20720165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02042 16 115 MAP Kinase Kinase Kinase AT5G57610 50.000 3.82e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02042 - - tpra:123903888 365.54