Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02032 ATGGCTGGAAACAACGATGCAGCGAAATCCAACACACGAAAGAGAAAAATCGGCGAAATCAAGAACGTGGAAAAGTCGAACAAGTGTGACGTGATGTTCTCAAAACGCAAAATTGGTCTCTTCAACAAAGTAACAGAGCTCTCTATTCTATGCAAAGCAAGAACCGCACTCATCATCGCATCACCCAACAAGGAACTTCATGCATGTGGCTATCCTAATTGCGATGCTGTCATTCAGCAATTTTTGACCGGAAAAGACAGCATGGACGACAGTGAGAAAAAGAAGCAAGAGGAGGTTGTGGAAACCCTAAGACTTGAATATGAAGCAATTGAAGATAAACTTACGGAAGAAGAGAAGAATTTGAAAGCTATCATTGATTCGAAAAGTAAGAGTGATTCTATTTTCCCTTGTTGGTGGGGTGATTCTATTGATGATATGGATTTAGAATCTCTCGAGGAATTTACAACTTCTTTACAAAATTTGAGACTTAATTTAAGTTCAGCCATTGATCAAAAGAAGTTAATGTTTGCATCCAATGACCAATTTAAGCCATTGTCAAATTTAATCCACATGGGTTTTTCAATTGCTCCCCAGCTGTAG 600 0.3867 MAGNNDAAKSNTRKRKIGEIKNVEKSNKCDVMFSKRKIGLFNKVTELSILCKARTALIIASPNKELHACGYPNCDAVIQQFLTGKDSMDDSEKKKQEEVVETLRLEYEAIEDKLTEEEKNLKAIIDSKSKSDSIFPCWWGDSIDDMDLESLEEFTTSLQNLRLNLSSAIDQKKLMFASNDQFKPLSNLIHMGFSIAPQL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02032 199 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre9g02032 199 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Trre9g02032 199 Coils Coil 151 171 - -
Trre9g02032 199 PANTHER MADS BOX PROTEIN 15 165 - -
Trre9g02032 199 Gene3D - 26 108 IPR036879 GO:0003677|GO:0046983
Trre9g02032 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 68 IPR002100 GO:0003677|GO:0046983
Trre9g02032 199 Coils Coil 93 127 - -
Trre9g02032 199 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre9g02032 199 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre9g02032 199 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre9g02032 199 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02032 Trre-Chr9 20461106 20463501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02032 14 162 Type I MADS-box Gene Family AT5G60440 30.128 4.11e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre9g02032 SRF-TF 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02032 - - tpra:123896833 218.779