Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02030 ATGGTAGAATTCGATGTATCTATTGATGGTGATTCGAATGATGTTCATTCAACTGCTGGTGATACTAATGAAGCTGAAGATTCCAGCTATTCGGTATCCAGTGGGCAGGGTGGGTCGGATGATGATGAAGGTGATGATGATCATGATCATGAGGATGAGGATGAGGATGACGAGGATGATGGCAATGCCAATGAATTTGATGATTCTGCATTTGTAGGCACTACGGTACGTATTAATTCTATGACTTCCGAAGAAATACGTGCTTTGGAATTTAGTAGTGTTGATGAGGCGTATGATTTCTATTACAAATATGGTAAATGCAAAGGTTTTTCTGTTAGGAAAAGTGATGATAAGAAGAAAAATGGGCCTGATGGTACTAAAATAATAACAAATAAGCTTTTTGTATGCAGTAAACAAGGTTTAAGAGATAAGAAACACCTATGTAAGCTAAATAGGAAAAGAGTGCACCGACGTTTGACACGTTCTAACTGCAATGCTAGGTTTCGTGTGACATACAAAGCCAATAAGGGTAAATTTGTAGTGTCTGTGTTTGAAGAGACTCATAACCATGAGTTAACCCCATCTAGGAAGAAAGGCTGCATATTTGAATTTATGCATAATTTTGAGCAGGCTGTGAGAAACTATAGAAATAACGAACTTGTTGCCGACTTTACATCAAAGTTCTCAGAACCTGTGCTGACAACTCAACTAAAAAAAATTGAGAGCCATGCCGCTGAAATTTTTACAGCGCAAATTTTCAAAGATGTGAAAGATGAAATCATGAAGGCTGGTGAATTGATTGTTAGGCAGAAGAAGGAAATTGGAGATACAAAGTTTTATACACTGACTAAATATTGTGTGGATAAGTATGAAAGAACAGTTATTTATGATGGCGTTACATTCCAATGTTCGTGTCGGATGTTTGATTCAAAAGGACTTCCGTGTTCTCATATTTTTAATGTGATGAAGGAAGAACATGTTGATCGCATTCATAGCAGTTTGATATTGTCGCAATGGACCAAGGATGCCAAAATTGCTTATTTGAACATGGCGGATGTTAATGGTTCAATTGATTCTGATTCGATTGAGCTTGCTCGTTTCGGGGCATATTGTTCTGTGTTTACAGCATTTTGCAAAGATGTTTCTAAAAAGGAAGGTGTGTATGGGGACATTATGGAGGACCTCATGAATTTAAGAAACAAATATTGCGGTGTGGAGGATCCTATTGGAACACAGAAGTCGGATGTTCGTGATCCAGTCCCGGTTAAGGTTAAAGGTGCTCCAAAGAGAAAAAAGAATGAAGCAAAATCTGTCAGGCGCTGTACAAAATGCAACAGTCCTAGTCATAATGCGAGGACTTGTTCGGAGAAAAAGAGAAACAAAAGTTGCAATGCTGAAAATAGTGTTCAAACCATATATTCAGAGGTACCGGAAGACCGTTGTGAAAGTAGTGTGCAAAAGAAAAATAAATTTTCAGAGCAACCGAAAGATCGTGGTGAAAGTAGTTTTCAAAATAAAAAGAGAAGTTGTGAGCAACCGATAGATAATATTGAAAGCAGTATGCCAAAGCAAAAGAAATGCTCGATGCAACGGCAAAATCGTCGCGCTAATGTGTCAACACCAGCACAAACGGATGTTACAAGTACAGTCGGACAATTGACTCCCATGTATGGATTTCACCCTATGATGCCTTACTTACATCCGATAATTCAACCGACGAACGCACCACATGTACCACCCATACAACCTGGATACCAATTCTATGGAATGAATGTTGGTCTGTTACAACAAGTGATTAATTCTGCTGATAAAAAAGATTGA 1821 0.3828 MVEFDVSIDGDSNDVHSTAGDTNEAEDSSYSVSSGQGGSDDDEGDDDHDHEDEDEDDEDDGNANEFDDSAFVGTTVRINSMTSEEIRALEFSSVDEAYDFYYKYGKCKGFSVRKSDDKKKNGPDGTKIITNKLFVCSKQGLRDKKHLCKLNRKRVHRRLTRSNCNARFRVTYKANKGKFVVSVFEETHNHELTPSRKKGCIFEFMHNFEQAVRNYRNNELVADFTSKFSEPVLTTQLKKIESHAAEIFTAQIFKDVKDEIMKAGELIVRQKKEIGDTKFYTLTKYCVDKYERTVIYDGVTFQCSCRMFDSKGLPCSHIFNVMKEEHVDRIHSSLILSQWTKDAKIAYLNMADVNGSIDSDSIELARFGAYCSVFTAFCKDVSKKEGVYGDIMEDLMNLRNKYCGVEDPIGTQKSDVRDPVPVKVKGAPKRKKNEAKSVRRCTKCNSPSHNARTCSEKKRNKSCNAENSVQTIYSEVPEDRCESSVQKKNKFSEQPKDRGESSFQNKKRSCEQPIDNIESSMPKQKKCSMQRQNRRANVSTPAQTDVTSTVGQLTPMYGFHPMMPYLHPIIQPTNAPHVPPIQPGYQFYGMNVGLLQQVINSADKKD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02030 606 MobiDBLite consensus disorder prediction 1 69 - -
Trre9g02030 606 Pfam FAR1 DNA-binding domain 99 193 IPR004330 -
Trre9g02030 606 MobiDBLite consensus disorder prediction 413 460 - -
Trre9g02030 606 MobiDBLite consensus disorder prediction 39 65 - -
Trre9g02030 606 MobiDBLite consensus disorder prediction 480 505 - -
Trre9g02030 606 PANTHER OS01G0519700 PROTEIN 201 475 - -
Trre9g02030 606 MobiDBLite consensus disorder prediction 506 547 - -
Trre9g02030 606 ProSiteProfiles Zinc finger SWIM-type profile. 290 326 IPR007527 GO:0008270
Trre9g02030 606 SMART 26again6 301 328 IPR006564 GO:0008270
Trre9g02030 606 MobiDBLite consensus disorder prediction 11 38 - -
Trre9g02030 606 Pfam SWIM zinc finger 296 318 IPR007527 GO:0008270
Trre9g02030 606 MobiDBLite consensus disorder prediction 477 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02030 Trre-Chr9 20402983 20405786 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre9g02030 FAR1 5.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02030 - - tpra:123887991 555.444