LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g02006	ATGGAATCTTTTAAATGTTCCACAAAGATCAAAACATGCAATGCATCACTCTACCACATAAACTACAATCACAACATAGAACAAATAGCAAATTTTTATTCTGTTGATTCTTCCAAAATCAAACCGATTATCCGCGGCACAAAACAAGATTACCTTATAAAAGTACCTTGTTCTTGCAAAAACACCAATGACCTTAGTGGTTATTTCTATGATACAATCTATACCGCGCGACCTAATGAAAGTTTCGTGGATGTTAAGAATCTTGTTTATAGCGGTCAAACATGGCAAGACGACATAAATTTAGTTGCAAATGAGAATGTAACAATACATATTCCATGTGGATGTTCGGAATTTGAGTCGGAAATTGTTGTTACATATACTGTTCAGCAGAATGATACACCAACATCGATTTCTCTTTTGCTTAATGCTACTGTTGATGGCATTGTGAAAATGAACCAAATTTTGGTTGCTAACCCTTCATTCATAGATATTGGTTGGGTGTTATATGTTCCTGATGAGGAATTAAAATTATCCTCACATTCCAACGGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCCTATTGAGTGTGACATTACTTTCAGTTATTACAGTGATTGTTCTAATTCTTAGGAGAAATAAAGCTTATCCAACCAGCAAAAGTGATCCAAAAACTTTCTCCAAAAGATCATTAGCCAATAGAACTATTTCCTTAAGGAATCATGAATTTCATAAAGAATATATGGAAGATGCAACACAATTTGAGTCAGAAAGACCAGTGATTTATGATTTTGAGGAGATTGAAGTTGCTACAAATAACTTTGATGAAACTAGAAGAATTGGAGTTGGTGGATATGGCACTGTCTATTTTGGAATGCTAGAAGATAAAGAGGTTGCTGTGAAGAAAATGAAGTCTACCAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCACATTAACATTGTGGAATTGTTAGGATATGCAAGTGGAGATGATCACCTTTATTTGGTTTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCTCTATTGAAAGGTCACCAACCTCTTTCTTGGTGTGCTAGAGCTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACATGACTACACGAAATCCCGATACGTGCACCGTGATATAAAGACAAGTAATATTCTTCTTGATGAGAAGTTGAGAGCAAAGGTAGCGGATTTTGGACTTGCAAAGTTAGTAGAAAGAACCAATGATGAAGAATTCTTAGCTACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAACTTCAAGTGACAATAAAAACTGATGTATTTGCATTTGGAGTGGTTTTGTCTGAGTTGATAACAGGGAAACGTGCATTATTTCGTGACAATAAAGAAGCCAATAATATGAAATCACTTATTGCAGTTGTTAACAAAATATTTCAAGATGATGATCCAATGACTGCTTTAGAAGCTGTTGTAGATGGAAATCTTCAACGCAATTATCCTATTGTAGATGCCTACAAGATGGCAGAAGTATCACATTGGTGCTTGAGTGAAAATCCAGTGGACAGGCCAGAAATGAAAGAAACAGTTATAGTATTGTCTAAGATTGTAATGTCTTCAATTGAATGGGAAGCTTCACTAGGTGGGGACAGCCAAGTTTTCAGCGGTGTATTTGATGGAAGATGA	1746	0.358	MESFKCSTKIKTCNASLYHINYNHNIEQIANFYSVDSSKIKPIIRGTKQDYLIKVPCSCKNTNDLSGYFYDTIYTARPNESFVDVKNLVYSGQTWQDDINLVANENVTIHIPCGCSEFESEIVVTYTVQQNDTPTSISLLLNATVDGIVKMNQILVANPSFIDIGWVLYVPDEELKLSSHSNGKEKKHKWVIIIGILLSVTLLSVITVIVLILRRNKAYPTSKSDPKTFSKRSLANRTISLRNHEFHKEYMEDATQFESERPVIYDFEEIEVATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSTKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKSRYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNKEANNMKSLIAVVNKIFQDDDPMTALEAVVDGNLQRNYPIVDAYKMAEVSHWCLSENPVDRPEMKETVIVLSKIVMSSIEWEASLGGDSQVFSGVFDGR	581

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g02006	581	Pfam	LysM domain	126	171	IPR018392	-
	Trre9g02006	581	FunFam	Kinase family protein	253	348	-	-
	Trre9g02006	581	SMART	serkin_6	277	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g02006	581	SUPERFAMILY	LysM domain	124	171	IPR036779	-
	Trre9g02006	581	ProSitePatterns	Protein kinases ATP-binding region signature.	283	305	IPR017441	GO:0005524
	Trre9g02006	581	SUPERFAMILY	Protein kinase-like (PK-like)	261	551	IPR011009	-
	Trre9g02006	581	ProSiteProfiles	LysM domain profile.	124	170	IPR018392	-
	Trre9g02006	581	Pfam	Protein kinase domain	278	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g02006	581	Gene3D	LysM domain	119	180	IPR036779	-
	Trre9g02006	581	CDD	LysM	124	170	IPR018392	-
	Trre9g02006	581	Gene3D	Phosphorylase Kinase; domain 1	255	348	-	-
	Trre9g02006	581	Gene3D	Transferase(Phosphotransferase) domain 1	349	566	-	-
	Trre9g02006	581	ProSiteProfiles	Protein kinase domain profile.	277	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g02006	581	SMART	LysM_2	125	171	IPR018392	-
	Trre9g02006	581	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	396	408	IPR008271	GO:0004672\|GO:0006468
	Trre9g02006	581	FunFam	PTI1-like tyrosine-protein kinase 3	349	567	-	-
	Trre9g02006	581	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	5	577	IPR044812	GO:0019199\|GO:0045087

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g02006	Trre-Chr9	20159835	20164339	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g02006	257	581	Receptor kinase-like Gene Family	AT1G51940	52.568	4.01e-118	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Trre9g02006		Pkinase	1.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g02006	-		-	gmx:100800907	863.603