LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g02005	ATGGCTTCTTTAATTCATCAAATTCTTTCACTTTTTCTTCTTTTTCTAGCATTTTCATTAACAAGTGTTTCTTCCATTGAAGTTTCAATCAAAAAATCTTACATGGAATCTTTTAAATGTTCCACAAAGATCAAAACATGCAATGCATCACTCTACCACATAAACTACAATCACAACATAGAACAAATAGCAAATTTTTATTCTGTTGATTCTTCCAAAATCAAACCGATTATCCGCGGCACAAAACAAGATTACCTTATAAAAGTACCTTGTTCTTGCAAAAACACCAATGACCTTAGTGGTTATTTCTATGATACAATCTATACCGCGCGACCTAATGAAAGTTTCGTGGATGTTAAGAATCTTGTTTATAGCGGTCAAACATGGCAAGACGACATAAATTTAGTTGCAAATGAGAATGTAACAATACATATTCCATGTGGATGTTCGGAATTTGAGTCGGAAATTGTTGTTACATATACTGTTCAGCAGAATGATACACCAACATCGATTTCTCTTTTGCTTAATGCTACTGTTGATGGCATTGTGAAAATGAACCAAATTTTGGTTGCTAACCCTTCATTCATAGATATTGGTTGGGTGTTATATGTTCCTGATGAGGAATTAAAATTATCCTCACATTCCAACGGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCCTATTGAGTGTGACATTACTTTCAGTTATTACAGTGATTGTTCTAATTCTTAGGAGAAATAAAGCTTATCCAACCAGCAAAAGTGATCCAAAAACTTTCTCCAAAAGATCATTAGCCAATAGAACTATTTCCTTAAGGAATCATGAATTTCATAAAGAATATATGGAAGATGCAACACAATTTGAGTCAGAAAGACCAGTGATTTATGATTTTGAGGAGATTGAAGTTGCTACAAATAACTTTGATGAAACTAGAAGAATTGGAGTTGGTGGATATGGCACTGTCTATTTTGGAATGCTAGAAGATAAAGAGGTTGCTGTGAAGAAAATGAAGTCTACCAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCACATTAACATTGTGGAATTGTTAGGATATGCAAGTGGAGATGATCACCTTTATTTGGTTTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCTCTATTGAAAGGTCACCAACCTCTTTCTTGGTGTGCTAGAGCTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACATGACTACACGAAATCCCGATACGTGCACCGTGATATAAAGACAAGTAATATTCTTCTTGATGAGAAGTTGAGAGCAAAGGTAGCGGATTTTGGACTTGCAAAGTTAGTAGAAAGAACCAATGATGAAGAATTCTTAGCTACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAACTTCAAGTGACAATAAAAACTGATGTATTTGCATTTGGAGTGGTTTTGTCTGAGTTGATAACAGGGAAACGTGCATTATTTCGTGACAATAAAGAAGCCAATAATATGAAATCACTTATTGCAGTTGTTAACAAAATATTTCAAGATGATGATCCAATGACTGCTTTAGAAGCTGTTGTAGATGGAAATCTTCAACGCAATTATCCTATTGTAGATGCCTACAAGATGGCAGAAGTATCACATTGGTGCTTGAGTGAAAATCCAGTGGACAGGCCAGAAATGAAAGAAACAGTTATAGTATTGTCTAAGATTGTAATGTCTTCAATTGAATGGGAAGCTTCACTAGGTGGGGACAGCCAAGTTTTCAGCGGTGTATTTGATGGAAGATGA	1848	0.3528	MASLIHQILSLFLLFLAFSLTSVSSIEVSIKKSYMESFKCSTKIKTCNASLYHINYNHNIEQIANFYSVDSSKIKPIIRGTKQDYLIKVPCSCKNTNDLSGYFYDTIYTARPNESFVDVKNLVYSGQTWQDDINLVANENVTIHIPCGCSEFESEIVVTYTVQQNDTPTSISLLLNATVDGIVKMNQILVANPSFIDIGWVLYVPDEELKLSSHSNGKEKKHKWVIIIGILLSVTLLSVITVIVLILRRNKAYPTSKSDPKTFSKRSLANRTISLRNHEFHKEYMEDATQFESERPVIYDFEEIEVATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSTKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKSRYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNKEANNMKSLIAVVNKIFQDDDPMTALEAVVDGNLQRNYPIVDAYKMAEVSHWCLSENPVDRPEMKETVIVLSKIVMSSIEWEASLGGDSQVFSGVFDGR	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g02005	615	SUPERFAMILY	LysM domain	158	205	IPR036779	-
	Trre9g02005	615	Gene3D	Phosphorylase Kinase; domain 1	289	382	-	-
	Trre9g02005	615	SMART	serkin_6	311	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g02005	615	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	430	442	IPR008271	GO:0004672\|GO:0006468
	Trre9g02005	615	ProSiteProfiles	Protein kinase domain profile.	311	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g02005	615	SUPERFAMILY	Protein kinase-like (PK-like)	295	585	IPR011009	-
	Trre9g02005	615	ProSitePatterns	Protein kinases ATP-binding region signature.	317	339	IPR017441	GO:0005524
	Trre9g02005	615	Gene3D	LysM domain	154	214	IPR036779	-
	Trre9g02005	615	Pfam	Protein kinase domain	312	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g02005	615	Pfam	LysM domain	160	205	IPR018392	-
	Trre9g02005	615	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	22	611	IPR044812	GO:0019199\|GO:0045087
	Trre9g02005	615	SMART	LysM_2	159	205	IPR018392	-
	Trre9g02005	615	Gene3D	Transferase(Phosphotransferase) domain 1	383	600	-	-
	Trre9g02005	615	FunFam	PTI1-like tyrosine-protein kinase 3	383	601	-	-
	Trre9g02005	615	FunFam	Kinase family protein	287	382	-	-
	Trre9g02005	615	CDD	LysM	158	204	IPR018392	-
	Trre9g02005	615	ProSiteProfiles	LysM domain profile.	158	204	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g02005	Trre-Chr9	20159835	20164441	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g02005	291	615	Receptor kinase-like Gene Family	AT1G51940	52.568	1.07e-117	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Trre9g02005		Pkinase	1.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g02005	-		-	gmx:100800907	875.93