Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01991 ATGGAGGAAATGTACGGAGTACCATCAACGGTGGAATACCACGGCGGAGACAAATCACTTATGACACCGGAGAATCTAATTTTTCCTAACGACTACAACACCTTCCTCATGTCCACTTCATCCACAACCCGAATTCCTATGTTCGGATCCGACGATATCTTCACCGCCGCAGCAGAACCTTCTTCCGCCGCAATTCATGATGACGTGGCAACATCTAGTGTTATGAAATCCAAAATCGCTTCTCATCCTTACTACCCTCGCCTCCTTCAAGCTTACATCGATTGTCAAAAGGTTGGTGCTCCTCCTGAAATCGCGCGTTTGTTAGAAGAAATTCGTCAAGAAAATGATCAACTTAAAAGAGACGTAGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGATGAATTTATGGAAACTTACTGTGATATGCTTGTGAAGTATAAATCAGACCTTACTCGTCCTTTTGATGAAGCTACAACGTTTTTAAACAAGATCGAAACTCAACTTAGCCATCTCTGCACTGGTGCTTCAGTTCCAACTGCTTCTGATGATGGTGGTGCATCTTCGGACGAAGATCTTAGTACAGGAGATGGTGAAGTTCAACAAGATGGATCACAATCAAGAGGAGAAGATCGTGAGCTCAAAGATAGGCTTCTACGCAAATTTGGGAGTCATATTGGTACTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAAGGGTAAACTTCCAAAAGAAGCAAGACAAACACTACTTCAATGGTGGAATCTTCACTACAAATGGCCTTATCCAACGGAAGCAGATAAGATTGAATTGGCTAAGACAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAATTTTCTATGATGGAAAATTTTACCGGACGTTTCCTTTCTGAAGAATGA 954 0.4119 MEEMYGVPSTVEYHGGDKSLMTPENLIFPNDYNTFLMSTSSTTRIPMFGSDDIFTAAAEPSSAAIHDDVATSSVMKSKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIRQENDQLKRDVVVSTCFGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHLCTGASVPTASDDGGASSDEDLSTGDGEVQQDGSQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNLHYKWPYPTEADKIELAKTTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFTGRFLSEE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01991 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 305 - -
Trre9g01991 317 Gene3D - 233 307 - -
Trre9g01991 317 ProSiteProfiles ELK domain profile. 214 234 IPR005539 GO:0003677
Trre9g01991 317 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Trre9g01991 317 MobiDBLite consensus disorder prediction 177 215 - -
Trre9g01991 317 SMART KNOX1_2 73 117 IPR005540 GO:0003677|GO:0005634
Trre9g01991 317 Pfam KNOX1 domain 75 116 IPR005540 GO:0003677|GO:0005634
Trre9g01991 317 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Trre9g01991 317 SMART HOX_1 236 301 IPR001356 GO:0003677
Trre9g01991 317 Pfam ELK domain 214 235 IPR005539 GO:0003677
Trre9g01991 317 SUPERFAMILY Homeodomain-like 235 308 IPR009057 -
Trre9g01991 317 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Trre9g01991 317 MobiDBLite consensus disorder prediction 177 204 - -
Trre9g01991 317 SMART ELK_2 214 235 IPR005539 GO:0003677
Trre9g01991 317 SMART KNOX2_2 124 175 IPR005541 GO:0003677|GO:0005634
Trre9g01991 317 Pfam KNOX2 domain 128 174 IPR005541 GO:0003677|GO:0005634
Trre9g01991 317 CDD homeodomain 246 298 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01991 Trre-Chr9 19798830 19809366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01991 1 317 Homeobox Transcription Factor Family AT1G23380 65.152 7.27e-146 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre9g01991 KNOX2 7.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01991 - - gmx:100794719 476.478