Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01983 ATGGAAGTTTTTAGTTTGGTTTTATGGATACTTGGTTTCTTGCTTCATTTGCTGATGAAGATTTCTTCTGCTACTCTTTCTCCTTCTGGAATCAACTATGAAGTTGTAGCTTTGATGGCTATAAAGACTGAGTTGAATGATCCTCACAATGTTTTGGAGAATTGGGATATTAATTCTGTTGATCCATGTAGTTGGAGGATGATTACTTGTACTTCAGATGGTTCAGTTTCTGCATTGGGATTGCCTAGTCAGAATTTGTCTGGTTCACTATCTCCTAGAATTGGAAACCTTACTAATTTACAATCTGTGTTACTTCAGAATAATGCTATTTCTGGTCATATTCCGGCTGCAATAGGAAGCCTGGAAAAGCTTCAGACACTTGATCTCTCCAATAATGAATTTAGTGGCGAGATGCCGAGTTCTTTGGGAGGCCTCAAGAACCTGAACTATTTGCGGTTAAATAATAACAGTCTTACAGGAGCTTGCCCTCAGTCTCTTAGCAACATCGAAAGCCTTACCCTTGTGGACCTCTCCTACAACAATTTGAGTGGTTCATTGCCAAGAATATCGGCAAGAACATTAAAGATTGTAGGTAACCCGTTAATTTGTGGTCCGAAAGAAAACAATTGTTCTACGGTTTTGCCCGAGCCACTTTCCTTCCCGCCAGACGCATTAAAAGCCAAACCAGACAGTGGTAAAAAAGGCCATCATGTAGCACTTGCTTTTGGTGCAAGTTTTGGTGCCGCGTTTGTCATTGTGATTATAGTCGGGCTTCTCATTTGGTGGCGATATAGACACAATCAACAGATATTCTTTGATATTAATGAGCATTACGACCCAGAAGTGCGCCTTGGTCATTTAAAAAGGTATTCATTTAAAGAGCTTCGGGCCGCAACTGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGTTTTGGAATAGTTTACAAGGCATGCTTGAATGACGGATCCGTTGTTGCCGTTAAACGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACGATAAGTTTGGCTGTCCACCGAAATCTTCTGAGGCTTCGAGGGTTTTGCAGTACTCAGAATGAAAGACTCCTTGTTTATCCATATATGTCTAATGGCAGTGTAGCCTCTAGATTAAAAGATCATCTTCATGGTCAACCAGCTTTGGATTGGACAAGGCGAAAGAGAATAGCGTTAGGTACAGCAAGAGGATTGGTTTATTTGCATGAGCAATGTGACCCTAAAATTATCCATCGCGATGTCAAAGCAGCCAACATATTGCTAGATGAAGAATTCGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAGCTTCTTGATCATAGAGATACCCATGTGACCACTGCCGTGCGTGGCACTATTGGTCACATTGCTCCTGAGTACCTATCCACCGGTCAGTCATCAGAAAAGACCGACGTGTTTGGATTTGGAATCTTGTTGCTTGAGCTTATTACAGGTCATAAGGCTCTAGATTTCGGTCGAGCAGCAAACCAGAAAGGCGTAATGCTTGATTGGGTTAAGAAACTACACCTTGAAGGAAAATTAAGTCAAATGGTAGATAAAGATCTCAAAGGCAACTTTGACATACTTGAATTAGGAGAAATGGTTCAAGTAGCACTCTTGTGTACACAATTTAATCCTTCGCACCGTCCGAAGATGTCCGAAGTGTTAAAGATGTTGGAAGGGGACGGTTTAGCTGAGAAATGGGAGGCGTCACAAAGGATCGAAACACCAAGGTTTCGGTTTTGTGAAAATCCACCTCAAAGATATTCTGATTTTATAGAAGAATCATCACTAATAGTAGAAGCAATGGAGCTTTCTGGCCCTAGGTGA 1878 0.4121 MEVFSLVLWILGFLLHLLMKISSATLSPSGINYEVVALMAIKTELNDPHNVLENWDINSVDPCSWRMITCTSDGSVSALGLPSQNLSGSLSPRIGNLTNLQSVLLQNNAISGHIPAAIGSLEKLQTLDLSNNEFSGEMPSSLGGLKNLNYLRLNNNSLTGACPQSLSNIESLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKENNCSTVLPEPLSFPPDALKAKPDSGKKGHHVALAFGASFGAAFVIVIIVGLLIWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLRGFCSTQNERLLVYPYMSNGSVASRLKDHLHGQPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLLDHRDTHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHLEGKLSQMVDKDLKGNFDILELGEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQRIETPRFRFCENPPQRYSDFIEESSLIVEAMELSGPR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01983 625 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Trre9g01983 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Trre9g01983 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Trre9g01983 625 SUPERFAMILY L domain-like 32 201 - -
Trre9g01983 625 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Trre9g01983 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Trre9g01983 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 595 - -
Trre9g01983 625 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Trre9g01983 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 586 - -
Trre9g01983 625 SMART LRR_typ_2 169 192 IPR003591 -
Trre9g01983 625 SMART LRR_typ_2 97 120 IPR003591 -
Trre9g01983 625 SMART LRR_typ_2 145 168 IPR003591 -
Trre9g01983 625 SMART LRR_typ_2 121 144 IPR003591 -
Trre9g01983 625 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01983 625 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Trre9g01983 625 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01983 625 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Trre9g01983 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Trre9g01983 625 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01983 625 SUPERFAMILY Protein kinase-like (PK-like) 279 576 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01983 Trre-Chr9 19598411 19602231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01983 67 625 Receptor kinase-like Gene Family AT1G60800 75.260 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre9g01983 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01983 - - gmx:100806943 1115.91