Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01960 ATGAAATCAGTGATTGAGAGATATAACAGTTGCAAGGAAGACCAACAAGTGACAAATCAAGAATCTGAACTCAAGTTTTGGCAAAGGGAGGCAGACATTTTAAGGCAGCAACTACAGACTCTACAGGAAAATCATCGGCAAATGATGGGAGAACAGCTTTACGGTTTGAGTATCCAAAACCTACAAGATTTAGAGAGTCAATTGGAACTGAGTCTCCAAGGAGTTCGCATGAAAAAGGAGAAAATTCTGACAGATGAAATCCAAGAGCTGAACCGGAAGGGAAACCTAATCCATCAAGAAAATGTGGAACTCTATAAGAAGGTCTATGGCACATCAGAAACGGAAGCAACCGCGACAAGCAAAAACGCATTTGTTCAATTTCCGTATGGTCTTTGCGGAGGAGGAGGAGGAGAATGTGCACAAACTTTATTTGACCTTCAGTTATGTCTACCTGAGCAAGAACAGTACTGTGAGACCTCAGGCAGTGGAAGTGCAACCAAATGA 504 0.4206 MKSVIERYNSCKEDQQVTNQESELKFWQREADILRQQLQTLQENHRQMMGEQLYGLSIQNLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGNLIHQENVELYKKVYGTSETEATATSKNAFVQFPYGLCGGGGGECAQTLFDLQLCLPEQEQYCETSGSGSATK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01960 167 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g01960 167 Pfam K-box region 18 108 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g01960 167 Coils Coil 17 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01960 Trre-Chr9 19281370 19283740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01960 1 162 MADS-box Gene Family AT2G22630 47.541 4.40e-47 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01960 K09264 - gmx:100795778 201.06