Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01954 ATGATGGAGTTACAAGTTATTTGGTTAATAAGATTGGTTGTGGCATGTGTTCTTTGTCTGTGTATATTTATCAGATCAGCTTCTTCTGCAATTGAAGGATTTAAGAGCATAGCATGCTGTGCTGATAAAGATTACACAGATCCATTGACAACCTTAAATTATACAACAGATTACCATTGGTACTCTGATAAAAGAAGTTGCAGACAAATACCAGAAATTGTGTTAAGCCACAGAAGCAATGAAAACGTTCGACTGTTTGAGATAGATGAGGGAAAGAGATGTTACAAATTGTCAACAATTAAGGATCAAGTATATCTGATAAGGGGAATATTTCCATTTGACAGTTCAAATTCTTCGTTTTATGTTTCGATTGGGGTAACAGAACTAGGCGAAGTAAGATCGTCCAAGCTCCAAGATTTTGAAATCGAGGGAGTTTTCAAAGCCACGAAAGACTACATAGATTTTTGCGTATTGAAGGAGGAGGTCAATCCCTTTATTTCTCAGCTTGAATTAAGGCCATTACCTGAGGAATACCTACAAGATTTCGATACCAGTGTTTTAAAACTGATAAGCAGAAATAATCTTTGCAGCACAAAAGATGAAATCAGGTTCCCAGTTGACCAAAACGATAGAATCTGGAAAGCAAATTCAACTCCATCATCTGCCCTTCCACTGTCTGCCAATGTCAGCAATGTTGACCTCAAAGGCAGTGTAACACCTCCTCTAGAAGTCCTACAAACAGCTCTTACTCACCCTGAGCGATTGGTGTTCATCCATGATGACCTTGAGACCGATGATTATGAATACTCTGTGTTTCTCTATTTCCATGAGTTAAATAGCACTCTTAAAGCAGGAGAAAGGGTGTTTGACATCTATCTAAACAATGAGATTAAAAAGGCAGGTTTTGATGTACTGGAAGGAGGATCCAAGTACAATTACACTGTCTTGAACATTTCAGCAAATGGATCACTAAATATAACCTTAGTCAAAGCATCTGGATCTAAGTTTGGACCCCTTTTGAATGCCTATGAGATCCTGCAGGCGCGACCATGGATCGACGAGACCAAACAAACAGATTTGGTACTTATTCAGAAGATGAGAGAAGAACTGCTGCTGCAAAACCAAGACAATGAAGCATTGGAGAGTTGGAGTGGAGACCCTTGTATGCTTTTCCCATGGAAGGGGATAGAATGTGACAGTTCAAATAGTTCATCTGTTATCACTAAGCTGGATCTTTCCTCAAATAATCTCAAAGGAACAATTCCCTCCAGTGTCACTAAGATGAACAATTTACAAATACTGAACCTGAGCCACAACCATTTTGATGGTTATATCCCCTCGTTTCCACCCTCCTCCTTGCTGATATCAGTAGATCTAAGCTACAATGACCTTATGGGGCAGCTTCCAGACTCCATGATCTCACTGCCGCATTTAAAATCATTATATTTTGGCTGCAATCAACACATGAGCGATGAGGATCAAGCCAAATTGAACAGTTCACTACTAATCAATACAGATTATGGGAGATGCAAAGCAAAAAAACCGAAATTTGGACAAGTTTTCGTGATTGGAGCTATTACAAGTGGATCAGTTTTGATTACTTTGGCTGCTGTTGGAATTCTTTTTGTTTGCCGTTATAGACACAAGTCAATTCCTTTGGAAGGATTTGGTGGAAAGAACTACCCAATGAATATAATTTTCTCATTGCCAAGCAAAGACGACTTCTTCATAAAGTCTGTATCAGTTAAACCGTTCACTTTGGAGTATATAGAACTGGCTACAGAAAACTACAAAACTTTGATAGGTGAAGGAGGATTTGGCTCTGTTTACCGAGGCACTTTAGACGATGGTCAAGAAGTGGCAGTGAAAGTCCGGTCGGCAACATCAACTCAGGGAACCCGAGAATTCGATAACGAGCTAAACCTACTTTCAGCTATACAACATGAGAACTTGGTGCCTCTTCTTGGTTTCTGCAATGAGTATGATCAACAAATTCTCGTGTATCCTTTCATGTCTAATGGCTCTTTGCTAGATAGACTATATGGGGAACCAGCAAAAAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTAGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCTGGACGCTCTGTAATACACAGGGACGTAAAATCAAGCAATATACTGCTTGATAATAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTTTCAAAATATGCTCCTCAGGAAGGAGACAGTTATGTTTCCCTTGAAGTAAGAGGAACAGCAGGCTATCTGGATCCTGAGTACTACAAAACCCAACAATTATCTGAAAAGAGTGATGTTTACAGCTTTGGCGTGGTTCTACTTGAAATTGTAAGTGGAAGGGAACCTCTCAACATAAAGAGACCACGGATTGAGTGGAGCTTGGTTGAATGGGCTAAACCATACATAAGAGCATCAAAGGTGGATGAAATTGTAGATCCTGGCATCAAGGGAGGATATCATGCAGAGGCACTGTGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTACTCAACATATAGGCCATGCATGGTTGACATTGTCCGCGAGTTGGAGGATGCTCTCATTATCGAAAACAATGCATCTGAATACATGAAATCTATTGACAGCCTCGGAGGATCCAACCGCTACTCAATTGTCATGGACAAAAGGGCGCTGCCCTCAGCTACATCTACAGCAGAATCAACCATCACAACCCAAACCTTATCACACCCTCAACCGAGATAG 2775 0.405 MMELQVIWLIRLVVACVLCLCIFIRSASSAIEGFKSIACCADKDYTDPLTTLNYTTDYHWYSDKRSCRQIPEIVLSHRSNENVRLFEIDEGKRCYKLSTIKDQVYLIRGIFPFDSSNSSFYVSIGVTELGEVRSSKLQDFEIEGVFKATKDYIDFCVLKEEVNPFISQLELRPLPEEYLQDFDTSVLKLISRNNLCSTKDEIRFPVDQNDRIWKANSTPSSALPLSANVSNVDLKGSVTPPLEVLQTALTHPERLVFIHDDLETDDYEYSVFLYFHELNSTLKAGERVFDIYLNNEIKKAGFDVLEGGSKYNYTVLNISANGSLNITLVKASGSKFGPLLNAYEILQARPWIDETKQTDLVLIQKMREELLLQNQDNEALESWSGDPCMLFPWKGIECDSSNSSSVITKLDLSSNNLKGTIPSSVTKMNNLQILNLSHNHFDGYIPSFPPSSLLISVDLSYNDLMGQLPDSMISLPHLKSLYFGCNQHMSDEDQAKLNSSLLINTDYGRCKAKKPKFGQVFVIGAITSGSVLITLAAVGILFVCRYRHKSIPLEGFGGKNYPMNIIFSLPSKDDFFIKSVSVKPFTLEYIELATENYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGFCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDNSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVYSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSATSTAESTITTQTLSHPQPR 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01954 924 PANTHER OS07G0107800 PROTEIN-RELATED 36 871 - -
Trre9g01954 924 SUPERFAMILY Protein kinase-like (PK-like) 575 867 IPR011009 -
Trre9g01954 924 Gene3D Ribonuclease Inhibitor 362 508 IPR032675 -
Trre9g01954 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Trre9g01954 924 FunFam Leucine-rich repeat receptor-like kinase 366 492 - -
Trre9g01954 924 ProSiteProfiles Protein kinase domain profile. 595 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01954 924 Pfam Malectin-like domain 42 346 IPR024788 -
Trre9g01954 924 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Trre9g01954 924 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 671 887 - -
Trre9g01954 924 FunFam Nodulation receptor kinase 567 670 - -
Trre9g01954 924 Gene3D - 197 349 - -
Trre9g01954 924 CDD STKc_IRAK 601 868 - -
Trre9g01954 924 Gene3D Phosphorylase Kinase; domain 1 567 670 - -
Trre9g01954 924 SMART serkin_6 595 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01954 924 SUPERFAMILY L domain-like 379 489 - -
Trre9g01954 924 Pfam Protein tyrosine and serine/threonine kinase 598 867 IPR001245 GO:0004672|GO:0006468
Trre9g01954 924 Gene3D Transferase(Phosphotransferase) domain 1 671 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01954 Trre-Chr9 19226432 19232026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01954 9 874 Receptor kinase-like Gene Family AT1G67720 33.742 1.22e-138 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre9g01954 Malectin_like 2e-43 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01954 - - gmx:100781986 1460.66