Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01953 ATGAACAAACAACCTACAAAAAGTCATGAAACAGTGATTGACATAAAACATAATAAGCCTGTGAGTTTCACTGGAGGACTTGAATTTGAATCTCTTACTTACACAGTCATAAAGAAGAAGAAAATCGATGGAAATTGGTCTAACGAAGACGTTGATTTGTTGCATGATATAACTGGTTATGCACCAAAGGGTAGTATCACTGCAGTTATGGGACCAAGTGGTGCTGGAAAATCAACTTTGTTGGATGGACTTGCTGGAAGAATTGCAAGTGGAAGTCTTAAAGGGAAAGTTTCATTGGATGGAATTAGTGTGAATGCAAGTTTGATTAAAAGAACTTCTGCTTATATTATGCAAGAAGATAGGCTTTTTCCTATGCTTACTGTTTATGAGACTTTGATGTTTGCTGCTGACTTCAGATTAGGGCCACTTTCAGTTGTTGATAAGATGCAGAGAGTTGAGAAGCTTATTGAACAGCTTGGATTATCTTATTCTAGGAACACCTACATAGGAGATGAAGGAACAAGAGGAATCTCGGGAGGAGAACGTCGCAGAGTCTCGATCGGGGTAGACATAATCCATGGACCGTCACTCCTTTTCCTAGATGAACCAACTTCAGGACTAGACTCGACAAGTGCTCTTAGTGTGATTGAAAAAGTACATGACATAGCAAGAAATGGTAGCACAGTTATTCTCACAATCCACCAACCTTCATCAAGAATTCAGCTTCTCCTTGACCATCTCATCATCCTTGCTAGAGGACAACTCATGTTTCAAGGATCATTTAAAGATGTAACTCTCCATTTGAACCGAATGGGACGAAAAGTACCTAAAGGAGAGAATCCAATTGAGAATCTAATTGATGTGATACAAGAGTATGATCAGTGTGATGTTGTTGGTGTTGAGGTGTTAGCTGAGTTTGCAAAAACAGGAACGAAACCACCTCTTTTGAATGACATGGAGGAAATTTCGATGTCGAGATCCGTTGCACCTTCTCCTATGCATAGAGGTTCTAGATTTGAGGAAAAATCTGGAGAATTTTCTTACTCATCACAAGTTAGTAGAAGGAGTTTGAATGATGACTTTGATCATAGTATTAGAAGTTCATATAATAACACACCAATGTCATGGAATGCTAGCAACAGTGCAGCTTTCTTGAAATTCACACCTTCAAGACTTAAAAATGAGCAAAAGGTGCAGAAGCCGGCAAGCCAAGCTTCCCCCGGCTACTACACATACTCGAGTGAAATCCTTCCAGCAACACCAACACCACATAGCAGTGACTATGTAGTGGATGAGAGTGACTACCTCACACCAGCAAATGGCACACCAGAACATCTAGGCCCAAAGTTTTCAAATTCCTACATAGGAGAGATATGGATCCTAATGCGTCGCAACTTCATAAACATACGGCGTACCCCTGAGCTTTTCCTATCAAGACTAATGGTGCTTACCGTCATGGGATTTATGATGGCTACAATGTTCAAAAATCCAAAAGACACCTTACAAGGAATCACGAACCGTCTCAGCTTCTTTATCTTCACAGTTTGTCTCTTTTTCTTCTCTTCCAATGATGCCGTCCCTGCTTTCATCCAAGAGAGGTTCATTTTCATCCGCGAAACTTCGCACAATGCTTATAGAGCTTCAACTTACACCATAGCTAGCTTAATCACCCACATGCCTTTTCTTGCACTCCAAGCTTTATCTTATGCAGTCATTGTTTGGTTTGCTTTAAAACTTAGAGGCCCTTTTCTATACTTCTTCCTTGTTCTCTTCATTTCTCTTCTTTCCACAAATTCTTTTGTTGTGTTTGTGAGTTCTGTGGTTCCAAACTACATCTTGGGCTATGCTGCAGTCATTGCCTTCACTGCATTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCGAGGATATTCCGAAATATTGGCGTTGGATGAATAAGATTTCGACAATGACATATCCTTATGAAGGACTCTTGATGAATGAGTATCAAACTAATCATGTTTTTGGGAACAATGATGGTGTACCTGTTACTGGTATCGATATCTTGAATAGTCTTCATATTGGTATTGAAGAGGTTAAGAAGAGGAACAATGTGCTTATAATGTTAGGTTGGGCTGTTCTATATAGGATTTTATTTTACATTATTCTTCGTTTTGCATCGAAAAATCAAAGGTCCTAG 2181 0.3952 MNKQPTKSHETVIDIKHNKPVSFTGGLEFESLTYTVIKKKKIDGNWSNEDVDLLHDITGYAPKGSITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGISVNASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSVVDKMQRVEKLIEQLGLSYSRNTYIGDEGTRGISGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSALSVIEKVHDIARNGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSFKDVTLHLNRMGRKVPKGENPIENLIDVIQEYDQCDVVGVEVLAEFAKTGTKPPLLNDMEEISMSRSVAPSPMHRGSRFEEKSGEFSYSSQVSRRSLNDDFDHSIRSSYNNTPMSWNASNSAAFLKFTPSRLKNEQKVQKPASQASPGYYTYSSEILPATPTPHSSDYVVDESDYLTPANGTPEHLGPKFSNSYIGEIWILMRRNFINIRRTPELFLSRLMVLTVMGFMMATMFKNPKDTLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIASLITHMPFLALQALSYAVIVWFALKLRGPFLYFFLVLFISLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSEDIPKYWRWMNKISTMTYPYEGLLMNEYQTNHVFGNNDGVPVTGIDILNSLHIGIEEVKKRNNVLIMLGWAVLYRILFYIILRFASKNQRS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01953 726 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Trre9g01953 726 Gene3D - 28 272 IPR027417 -
Trre9g01953 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 277 IPR003439 GO:0005524
Trre9g01953 726 FunFam ABC transporter G family member 6 37 275 - -
Trre9g01953 726 Pfam ABC-2 type transporter 457 663 IPR013525 GO:0016020|GO:0140359
Trre9g01953 726 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Trre9g01953 726 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 17 712 - -
Trre9g01953 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 267 IPR027417 -
Trre9g01953 726 CDD ABCG_EPDR 27 259 - -
Trre9g01953 726 SMART AAA_5 63 261 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01953 Trre-Chr9 19218755 19222183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01953 12 371 Calmodulin-binding Proteins AT2G36910 26.230 6.36e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01953 K05681 - gmx:100804809 1141.72