Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01951 ATGGAGCCTTTTAGGGTCAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAACTTTTGAACGAATTCATTCCAAAACTCTCGCATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAGTATGCTGATCTGGATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGTCAGCTTCTTTTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGGCATCAGATGCAACAACTGTCAAAATGTTGGTGCTACAAGTGGAGATTTTATTCAGCTCACTTGTATGTGTAAAGATGAGCTTGACATTGGACACATTAATTGTTCTGAGGTATCAATCCAGAGATTACATGAAAATACTGATAGGAGCTTAAGGACCTATTTAAGCAATGGTGATCTTAATGGATGA 474 0.3882 MEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLDSVDFLFEIDDDRQLLFLYERGKKKLMEGYIVAFEGIRCNNCQNVGATSGDFIQLTCMCKDELDIGHINCSEVSIQRLHENTDRSLRTYLSNGDLNG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01951 157 Pfam mRNA capping enzyme, catalytic domain 2 56 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre9g01951 157 PANTHER MRNA-CAPPING ENZYME 2 90 - -
Trre9g01951 157 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 2 57 - -
Trre9g01951 157 Gene3D - 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01951 Trre-Chr9 19193339 19195280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01951 1 94 Protein tyrosine phosphatase (PTP) family AT5G01290 72.917 7.72e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01951 K13917 - gmx:100803597 189.504