Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01945 ATGCCTAGGAAGAAGTTGAAACTTGCCTTTATCGTTGATGATTGCATAAGGAAGACAACCTATAAGAAAAGAAAGAAGGGCATCATCAAGAAGGTGAGCGAACTAACCATTCTTTGCGATATTCCAGCATGTGCTATAATTTCAAATCCTTTTGATTCCAAAGCAGAGGTGTGGCCAAATCTAGCGGAAGCCAAACAAATTGTTGAGAGATATCAAAATTCATCTGTAATAGATGGTGCGAAAAATGTGAACCAAGAGAGCTTCCTCTTGCAGAGGATCACTAAAGCCAGAGAGCACCTTAAAAAGCAAAAGCACGACATTCGTGAAAAGGAGCTGACCATTCGTATGATTGGGTACATGAAAAACAAACAGCAGCCTGATGATTTATCTGTTTTAGATTTGAAAGAAGTTGATAAGCTAATTGAGAAAAATCTGAAAGAGATTGATAGCAAGATTGCTGAGCTCAATTGA 471 0.3822 MPRKKLKLAFIVDDCIRKTTYKKRKKGIIKKVSELTILCDIPACAIISNPFDSKAEVWPNLAEAKQIVERYQNSSVIDGAKNVNQESFLLQRITKAREHLKKQKHDIREKELTIRMIGYMKNKQQPDDLSVLDLKEVDKLIEKNLKEIDSKIAELN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01945 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Trre9g01945 156 PANTHER MADS BOX PROTEIN 3 152 - -
Trre9g01945 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre9g01945 156 Coils Coil 90 110 - -
Trre9g01945 156 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Trre9g01945 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre9g01945 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre9g01945 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre9g01945 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01945 Trre-Chr9 19090260 19090730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01945 1 152 Type I MADS-box Gene Family AT5G48670 43.791 6.85e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre9g01945 SRF-TF 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01945 - - gmx:100792290 179.874