Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01943 ATGGAGCTTTCTCAACTTGGTTTTCTTGAAGAGCTATTAGCTCCAAGAAAAGACACATGGAATACTTTATCAACTGGTTTGAATGAACTACTACTCCCTAATGGTTGGTCCTTTGACTCATTTGATGAAAATCTACTCATAAATCCATCTTTAAATCCATCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCTGCAACATCATACCCTTTTGTTGATGGGTTCTCAGTGCCAGAGCTTGATGATTCAGCACCAATTTTACCTCATGAAGGTGTTGAAGAGTTTGGTTTTGTTGGAAATGAGAACAAGAGTTTGGAACAAGGGAAAATTAGCTGTAAAGTTGAGGAACAAGTGAGTGAGATTCCTGTTTTTAATATGGGTTTGTGTGGTGAGAAAAAAGCTAAGTCTAAAAGGGTTGAAGGACAACCTTCAAAGAATCTCATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGATAGGCTTTCTATGCTTAGGTCAATTGTCCCTAAAATCAGCAAGATGGACAGGACATCAATTCTAGGAGATACAATTGATTACATGAAAGAGCTTCTAGAAAGGATTAGTAAGTTGCAAGAAGAAATGGATGAGGAAGGAACAAATCAAATAAACCTTTTGGGAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAGGACACAAGGATTAGTATCTGCTGTGCTACAAAGCCAGGATTATTACTATCAACTGTGAACACATTGGAAGCATTAGGCCTTGAGATTCATCAATGTGTCATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTAAATGGTCAGAGAAATTGTATGAATCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGGAGATGTCTTTAA 972 0.3755 MELSQLGFLEELLAPRKDTWNTLSTGLNELLLPNGWSFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDAATSYPFVDGFSVPELDDSAPILPHEGVEEFGFVGNENKSLEQGKISCKVEEQVSEIPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEMDEEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVNGQRNCMNPEEIKQSLFRNAGYGGRCL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01943 323 Coils Coil 196 216 - -
Trre9g01943 323 Gene3D - 140 214 IPR036638 GO:0046983
Trre9g01943 323 Pfam Helix-loop-helix DNA-binding domain 156 199 IPR011598 GO:0046983
Trre9g01943 323 CDD ACT_UUR-ACR-like 249 290 - -
Trre9g01943 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 112 317 - -
Trre9g01943 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 214 IPR036638 GO:0046983
Trre9g01943 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Trre9g01943 323 SMART finulus 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01943 Trre-Chr9 19039314 19041334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01943 11 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 48.094 8.40e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g01943 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01943 - - gmx:100806571 530.791