Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01927 ATGTCTCTGGCAGCGGTGGTTACGGAGGAGGAAGGGCGGAACAAACTGGTTTCTGCTTCTTCACCATCTTTAGACTGTTTTTCTCAGAATGGTGTTGTTGATTTGAAAGAACGGAATTACTTGGGATTGTCAGATTGTTCATCAGTGGATAGTTGTGATTCAACTCTCCCGAGCTTGTGTGATGAGAAAAAGGTGAACTTGAATTTGAAAGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCACCTGAAAGGGATTTGGATTTTTATTCGACAAAGCTTGATGAGAAACCTTTGTTCCCTTTGCTTCCTGCAAAAGATGGAATCCAGAAGACTGTGGTTTCGGGTAACAAGAGAGGATTTGCTGATACTGTTGATGGGTTTTCTCAGGGGAAGTTTAATGGTAATACTGGGATTAACGTGATGCTATCGCCTAGACCTGTTGTAGCTCAGCCGAACACCGTGAAAGAAATGCCGAGTAAGGTGTTGCAGGAAAGGCCTTGTGCAGCTAGAGGAACTACTGGTCATAATCATGCAGGTGCTGCTTCTATCGCTGGCTCACAGCCAGCATCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCGTTTAGGAAAAACTCCATGGCCACAGCTTCCAAGAACAACAACGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAACTTATACAACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACGCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGCTAAGGGACTTCTTGCATGGTTCAGAATACGTTCTCACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGATACTTGCAGAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCAATGGAAAAGTCCAAAAGCAGGAGTTAG 1050 0.4486 MSLAAVVTEEEGRNKLVSASSPSLDCFSQNGVVDLKERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPERDLDFYSTKLDEKPLFPLLPAKDGIQKTVVSGNKRGFADTVDGFSQGKFNGNTGINVMLSPRPVVAQPNTVKEMPSKVLQERPCAARGTTGHNHAGAASIAGSQPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMMSESKLRDFLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01927 349 Pfam AUX/IAA family 72 340 IPR033389 -
Trre9g01927 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 336 IPR003311 GO:0005634|GO:0006355
Trre9g01927 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Trre9g01927 349 FunFam Auxin-responsive protein 224 341 - -
Trre9g01927 349 Gene3D - 226 343 - -
Trre9g01927 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01927 Trre-Chr9 18778679 18782333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01927 228 334 B3 DNA Binding Superfamily AT5G37020 31.776 1.31e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre9g01927 AUX_IAA 3.5e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01927 K14484 - gmx:547502 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01927 9 18778679 18782333 Trre9g01927 9 18778679 18782333 ECH
Trre9g01927 9 18778679 18782333 Trre15g01955 15 15769979 15772761 PCT