Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01880 ATGGCAACTTTAGAATCAGCCATAACTGTATTTACACCTCAACGTTTTTCAAATAACTACTACCATTTCCTCGCTAAATCACCCGATTCCGTTAAACTTCAAGCTTCCACTTCAATCCCTTCTTCTTCATCTTCCCTTTTCTCTCACTTTTCTTCATCTTCTTCCAAATCCCGAACACTCTGCTTTGCTCTTCAAGAGGTAACAGAAGCAGCAATTGAAGACGATAAAACAGAGCCATTAAACAACGTTAAGAAGAAGCTCTGTGTCTTTAATTTACCTTGGACTCAGTCTGCACCAGACATCAATGACCTCTTTGCCCAATGCGGAACTGTAATTTCCGTCGAGATTATAAAGAACAAAGATGGGAAGGGAAAAGGTTATGCATTTGTTACTATGGATACAGGAGAAGAGGCTCAGGCTGTTGTTGATAAATTTAATGGTCATGAAATATCAGGCAGGATAGTAAGGGTAGAGTTTGCAAAGAGTTTAAAGAAACCTCCTTCTTCTCCTCCTCCAAAAGGTTTACCTCCTAGCGATGCACGCTATGTAATTTATGCTTCCAACCTTGCATGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAGAACCAGTTTCAGCCAGGGTTGTCTTTCAGACCGCTGATGGGAGATCTGCTGGGTATGGATTTGTGTCTTATCATACAAAGGAGGAAGCAGAGGCTGCCGTTTCTGCTTTGGATGGGAAGGAGTTAATGGGACGACCACTTCGCATAAAAATAAGTGAAAAGAAGGTTAAAAAAGCTGAAAGTGAAGAAGGTGAAGAGCAAACTGCTGCAAGTGATGAAGGTGGTGAAAAGAAAATTGCTGAAAGTGATGAAGGCGATGAAAAGCAAGTTGACAAAGCTCAACTCGAAGAGTCATAA 918 0.4096 MATLESAITVFTPQRFSNNYYHFLAKSPDSVKLQASTSIPSSSSSLFSHFSSSSSKSRTLCFALQEVTEAAIEDDKTEPLNNVKKKLCVFNLPWTQSAPDINDLFAQCGTVISVEIIKNKDGKGKGYAFVTMDTGEEAQAVVDKFNGHEISGRIVRVEFAKSLKKPPSSPPPKGLPPSDARYVIYASNLAWKARSTHLRDIFTENFKEPVSARVVFQTADGRSAGYGFVSYHTKEEAEAAVSALDGKELMGRPLRIKISEKKVKKAESEEGEEQTAASDEGGEKKIAESDEGDEKQVDKAQLEES 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01880 305 CDD RRM_SF 87 158 - -
Trre9g01880 305 SMART rrm1_1 183 257 IPR000504 GO:0003723
Trre9g01880 305 SMART rrm1_1 86 158 IPR000504 GO:0003723
Trre9g01880 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Trre9g01880 305 SUPERFAMILY RNA-binding domain, RBD 85 261 IPR035979 GO:0003676
Trre9g01880 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 162 IPR000504 GO:0003723
Trre9g01880 305 Gene3D - 166 273 IPR012677 -
Trre9g01880 305 PANTHER OS02G0815200 PROTEIN 26 262 - -
Trre9g01880 305 MobiDBLite consensus disorder prediction 260 305 - -
Trre9g01880 305 Gene3D - 61 165 IPR012677 -
Trre9g01880 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Trre9g01880 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01880 Trre-Chr9 18017534 18021161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01880 87 274 Eukaryotic Initiation Factors Gene Family AT3G16380 26.596 1.70e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01880 - - gmx:100793319 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01880 9 18017534 18021161 Trre9g01880 9 18017534 18021161 ECH