Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01878 ATGGAAACTAAGCAAACTGTTGTGCATCTAGGAAGACCGTTTCTAAGACCAGATCAATGGGATGTGCTAGCTCTACTGTACCAAGATTTTGATCTGATACGTTCTGAAGGTCCAAGGTACGGTGTTAAGATTTTAACCATTCCAGAAAACCAAAAAAGCAGTGGAATTCCGCACAGTATCTTGAATCACGTCTCTATCCTCAAAGCATTGGAAACAGTGATAAGAATTGATGAGGATGTGGAAGACATTCAAAAACTTGGAAAACCTTTGCTACGTCAAGCTCTTTCTGGATTGGCATACATTCATATTCAGAAAATTATACACAGAGATCTGAGACCTCTTAATATTCTGGTTTCATTTAAAAATCAGGAGATCAATGAAGTGAAGCTAACTGACTTTGGTGTGGCAAAATCTATTGCACCTCCTCTTTCACCCTACTCTATTAATATGGGTAATCCATGTTATATGTTGAGATTAATCCATAGTTGA 489 0.3763 METKQTVVHLGRPFLRPDQWDVLALLYQDFDLIRSEGPRYGVKILTIPENQKSSGIPHSILNHVSILKALETVIRIDEDVEDIQKLGKPLLRQALSGLAYIHIQKIIHRDLRPLNILVSFKNQEINEVKLTDFGVAKSIAPPLSPYSINMGNPCYMLRLIHS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01878 162 SUPERFAMILY Protein kinase-like (PK-like) 88 156 IPR011009 -
Trre9g01878 162 Gene3D Transferase(Phosphotransferase) domain 1 84 157 - -
Trre9g01878 162 ProSitePatterns Tyrosine protein kinases specific active-site signature. 106 118 IPR008266 GO:0004672|GO:0006468
Trre9g01878 162 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 84 141 - -
Trre9g01878 162 Pfam Protein kinase domain 86 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01878 162 ProSiteProfiles Protein kinase domain profile. 1 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01878 Trre-Chr9 18002323 18004509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01878 88 149 Core Cell Cycle Gene Families AT5G63610 51.613 2.22e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre9g01878 Pkinase 2.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01878 - - psat:127137399 78.9517