Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01877 ATGGGCTGCATATTTTCTGAGATGCTTAAGCGCCAACCTCTGTTCGTTGGTAAAGATGGACTGAAGATATTGACTGAGATATTTTGCCGAAGGACCTTGCAGCTGAATTCCCTATGCTTACCAGATGGCCTTGATCTTCTTTCAAAAATGCTTTGCCTATGCCCAAATAGCAGGATTTCAGCTGATGAAGCACTTGACCACCCATATTTTCGACCTTCCGCCCCCTGA 228 0.4518 MGCIFSEMLKRQPLFVGKDGLKILTEIFCRRTLQLNSLCLPDGLDLLSKMLCLCPNSRISADEALDHPYFRPSAP 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01877 75 Pfam Protein kinase domain 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g01877 75 Gene3D Transferase(Phosphotransferase) domain 1 1 75 - -
Trre9g01877 75 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 70 - -
Trre9g01877 75 SUPERFAMILY Protein kinase-like (PK-like) 1 72 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01877 Trre-Chr9 17995157 17997266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01877 1 70 Core Cell Cycle Gene Families AT3G54180 38.776 1.23e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trre9g01877 Pkinase 3.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01877 - - tpra:123923550 83.5741