Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01876 ATGGCTTCTCTTGAAAATCCAAAAGCTTGGGTTCCATATATGAACAACAAAGATTGTTCTCAAGGTTTTTGTAGCTTCTATTGTCCTCAATGGTGTTATGTAGTCTACCCTCCACCTCCTCCTTCACCCTTTGAATTCCCTGATGATGATTCAAGTACAAATTTCTCCCCTCTTGTTATAGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTAACTTACTACACCTTAATATCGAAGTACTGCGGCCGCAGAATATCATCATCGCAAAGTGAATCGCGCGAAACAAATGATGAATTAGAAGACAATCATCATCATCATAACCCTTCAATCCATGAGCCATGGAATGTTTCAACAAATGGCTTAGATGAAGTTTTGATTAAATCCATAACAGTTTGTAAGTACAAAAAGAATGATGGACTGGTTGATGTAACAGATTGTTCTGTTTGTCTCAATGAGTTTCAAGATGATGAAAGTATTAGACTTTTACCTAAATGTAGCCATGCTTTTCATCTACCTTGTATTGATACATGGCTCAAATCTCACTCAAATTGTCCTCTTTGTCGCGCTAGCATATTCGCCTTCAATGCTTCGAGTTCAAGTGGTTCAACACTTCATGTGCCAGCACAAGTTATAGAACAATCTTCAAGGAATGAAGTTTCTTTAGAAAATCAACATTTGAATGAAATTGTAGATGTTGAAAGAGACAATGAATTGGGTGTGGAGGAACAAGTTCCAATTCCAAAGACTGAATTTCGCGCTTTAAGCGATTTAGGAAATTTAAGAGGAAGGCATAATGTGATTGAGATTAGAGATAATGAAGATTATCGTGAATCGATTCGAAGATCGGTTTCTATGGATCATTCATTTCAAAGTGGTCTTTCACTTGTTGAAGATGATAATGTTATGCATATAAATCAAGAACAAGATTCTCAAGTTGAAAGTTCATCAAAGAGATTAAGAGGTGAAAGTGAAAGTAGTAAATCTAGCTATAGTAGAAAGGTTTTGCATTGTGTTTTAAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTTCTTAGTAGAAGTGGCAGAGGAAGGCTTGGAGTTTTGCCTGTCTGA 1113 0.3612 MASLENPKAWVPYMNNKDCSQGFCSFYCPQWCYVVYPPPPPSPFEFPDDDSSTNFSPLVIAIIGILASAFLLVTYYTLISKYCGRRISSSQSESRETNDELEDNHHHHNPSIHEPWNVSTNGLDEVLIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRASIFAFNASSSSGSTLHVPAQVIEQSSRNEVSLENQHLNEIVDVERDNELGVEEQVPIPKTEFRALSDLGNLRGRHNVIEIRDNEDYRESIRRSVSMDHSFQSGLSLVEDDNVMHINQEQDSQVESSSKRLRGESESSKSSYSRKVLHCVLSPIAMKRSFSSGRFFLSRSGRGRLGVLPV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01876 370 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Trre9g01876 370 Pfam Ring finger domain 147 190 IPR001841 -
Trre9g01876 370 SMART ring_2 148 189 IPR001841 -
Trre9g01876 370 SUPERFAMILY RING/U-box 127 196 - -
Trre9g01876 370 CDD RING-H2_EL5-like 147 190 - -
Trre9g01876 370 MobiDBLite consensus disorder prediction 93 112 - -
Trre9g01876 370 MobiDBLite consensus disorder prediction 308 327 - -
Trre9g01876 370 PANTHER RING-H2 FINGER PROTEIN ATL16 43 329 IPR044600 GO:0016567|GO:0016740
Trre9g01876 370 FunFam RING-H2 finger protein ATL54 123 196 - -
Trre9g01876 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 197 IPR013083 -
Trre9g01876 370 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01876 Trre-Chr9 17987107 17988219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01876 1 198 C3H Transcription Factor Family AT3G03550 55.981 2.49e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01876 - - gmx:100792267 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01876 9 17987107 17988219 Trre9g01876 9 17987107 17988219 ECH
Trre9g01876 9 17987107 17988219 Trre15g01989 15 16093125 16094195 PCT