Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01875 ATGGCACCTTCTTTTGACATAACAAGTCACACTGTTTGTGTCATGGATGCTTCTGGCCAATTGGGTTTTAGCCTTGTTCAAAGACTCCTTCAAAGAGGTTATACTGTTCATGCCTCCGTTCAAAAATATGGGGAAGATCTATTCAATGGGATTTCAGCTGATTCAGATAAACTCAAGATTTTTCAATCAGACCCTTTTGATTATCATAGCATAATTGATGCTCTTAGAGGCTGTTCTGGTTTGTTCTATACATTTGAACCTCCTCTTGATCAACCCAATTATGATGAATATATGGCTGACGTGGAAGTTAGAGCAGCACACAATGTGCTTGAAGCTTGTGCTCAAACAGAAACTATTGATAAAGTTGTTTTCACATCCTCGGCCACTGCTGTTGTTTGGAGGGAGGATCGTAAAACCATTGAACCTGAAATAGATGAAATTCATTGGAGTGATGTCAATTTCTGTCGCAAATTCAAGCTATGGCATGGGATGTCAAAGACATTATCAGAAAAAACAGCATGGGCCTTAGCAATGGACAGAGGTGTGAACATGGTGTCAATAAACGCAGGGTTATTGATGACAAATGATCTTTCCATCAAACACCCTTATTTGAGAGGTGCTGCTGAAATGTACGAGGATGGTGTCTTTGTGACCGTTGATTTAGGATTTTTGGTGGATACCCACATCTGTGTTTACGAGGATGTTTCATCGTACGGTCGTTATTTGTGCTTCAATCATATTATTAATACTCAAGACGACGCTGTTCAGCTTGCACAGAAATTAGCTCCTACCGCATCTTCTTCTTTACCCCAAAGTGATGACTATGGTAAGATTTTCATTGAACAGAAAATAAGCAACAAGAAGTTGAACAAATTAATGGTGGACTTTGAGGCTTAA 897 0.3935 MAPSFDITSHTVCVMDASGQLGFSLVQRLLQRGYTVHASVQKYGEDLFNGISADSDKLKIFQSDPFDYHSIIDALRGCSGLFYTFEPPLDQPNYDEYMADVEVRAAHNVLEACAQTETIDKVVFTSSATAVVWREDRKTIEPEIDEIHWSDVNFCRKFKLWHGMSKTLSEKTAWALAMDRGVNMVSINAGLLMTNDLSIKHPYLRGAAEMYEDGVFVTVDLGFLVDTHICVYEDVSSYGRYLCFNHIINTQDDAVQLAQKLAPTASSSLPQSDDYGKIFIEQKISNKKLNKLMVDFEA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01875 298 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 134 IPR002225 GO:0003854|GO:0006694|GO:0016616
Trre9g01875 298 Gene3D - 4 298 - -
Trre9g01875 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 263 IPR036291 -
Trre9g01875 298 CDD FR_SDR_e 12 294 - -
Trre9g01875 298 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 289 - -
Trre9g01875 298 FunFam Cinnamoyl-CoA reductase-like SNL6 isoform A 4 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01875 Trre-Chr9 17968386 17971179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01875 12 296 Monolignol Biosynthesis Gene Families AT5G58490 31.023 8.46e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01875 - - gmx:100793329 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01875 9 17968386 17971179 Trre9g01875 9 17968386 17971179 ECH