Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01859 ATGGATTCTAAGGATGATGAGAGAAAAAAAGAACGAAAAGTTCCTATGTTAAAGCTGTTTTCTTTTGCTGATTCTTATGATTATGTCTTAATGTTTATTGGATCTATTGGAGCATGTATTCATGGTGCTTCTGTTCCTATTTTCTTTATCTTCTTTGGAAAGTTGATCAATGTTATTGGCTTGGCTTATCTTTTTCCTAAGGAAGCCTCTCACCAAGTTGCCAAGTACTCATTAGATTTTGTGTATCTAAGTGTAGCAATATTATTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGAGAAAGACAAGCAGCAAAAATGAGAATGGCTTATTTAAAGTCTATGTTGAATCAAGATATAAGTTTATTTGATACTGAAGCATCAACTGGAGAAGTTATTTCTGCTATTACAAGTGACATTATCATTGTTCAAGATGCTCTATCTGAGAAGGTAGGGAATTTCATGCATTACATAAGTCGATTCATAGCTGGATTTACAATTGGTTTTGTGAGAGTGTGGCAGATTAGTTTAGTCACACTTTCAATTGTTCCATTGATTGCCCTTGCTGGAGGTCTTTATGCATATGTCACAATTGGCCTCATTGCAAAAATTAGAAAAGAATATGTTAAGGCTGGTGAAATTGCTGAGGAGGTGATAGGCAATGTTAGAACAGTACATGCATTTGCAGGAGAAGAAAGAGCAGTAAAATCATACAAAACAGCTCTTATGAAAACTTACATAAATGGTAGAAAAGCAGGTTTAGCAAAAGGTCTGGGACTTGGCTCAATGCATTGTGTTCTGTTTTTATCATGGTCTTTGCTTGTTTGGTTCACTAGCATCGTCGTTCACAAGAACATCGCTAATGGTGGCGAGTCTTTCACTACCATGCTCAATGTCGTAATATCCGGCTTGTCACTTGGGCAGGCGGCACCAGATATCTCGGCATTTATCCGAGCAAAGGCGGCAGCTTATCCGATTTTTGAGATGATAGAAAGGGATACAGTGAGCAAAAAGAGCGCAAAAACCGGTCGAAAATTAAGCAAATTGGATGGTCATATCCAGTTTAAGGATGTATGTTTCAGTTATCCATCTCGTCCGGACGTAGCAATCTTCAACAACCTCAATCTTGACATTCCTGCAGGGAAAATTGTAGCACTTGTGGGAGGAAGTGGTTCCGGAAAGAGTACTGTTGTATCGTTGATCGAACGTTTTTATGAACCTCTTTCTGGTCATATACTTTTAGACAAGAATGATATCAGAGAACTTGATCTTAAATGGCTTAGGCAACAAATTGGACTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGTATCAAGGAGAATATTTTGTATGGAAAAGATGATGCTACTCTTGAAGAACTAAAACGCGCCGTGAAACTTTCAGATGCTCAATCTTTTATCAACAATCTTCCTGAAAGATTAGACACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGTGGACAGAAGCAAAGGATTGCAATATCTCGTGCAATTGTGAAGAATCCGTCGATCCTTTTATTAGATGAAGCAACCAGTGCTCTTGATGCCGAGTCTGAGAAAAGTGTACAAGAGGCGCTGGATCGTGTCATGGTGGGAAGAACAACGATTGTAGTTGCACACAGACTTTCTACGATTAGGAATGCAGATGTGATAGCTGTTGTACAAGGTGGGAGAATTGTGGAGACTGGCAACCATGAAGAACTCATGGCAAATCCAACTAGTGTTTATGCATCTCTTGTTCAACTCCAAGGCGCGTCTTCTTTGCAACGCCTTCCCTCTGTTGGTCCTAGCTTAGGACGCCAATCAAGCATAAGCTACTCGAGAGAATTATCGCGTACGGGAACAAGCATTGGTGGTAGTTTTCGATCAGACAAAGACTCGATTGGCCGTGTTGGTGGTGATGATGGAAACAAGTCAAATCATGTTTCAGCAAAAAGACTATATTCTATGATTGGACCTGATTGGCCTTATGGAGTTATTGGAACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCACTTTTTGCACTCGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGAAACAACGCAACGGGAAGTTAAGAAAATCGTTTTCCTCTTTTGTGGAGGTGCAGTTATAACTGTCACAGTCCATGCCATTGAACATCTTTTTTTCGGAATCATGGGCGAGCGACTTACCCTTCGTGTGCGAGAAAAGATGTTTACCGCTATTTTGAAGAATGAAATTGGATGGTTTGATGAAACAACCAACACAAGTTCTATGCTTTCATCGCGTTTAGAGTCCGACGCAACATTAATGCGAACAATAGTTGTTGATCGCTCAACGATTCTGTTACAGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCATTCCTTTTGAATTGGAGAATAACACTTGTTGTCTTGGCTACATATCCTTTGATAATTAGTGGACACATTAGTGAGAAACTTTTCATGAAAGGATATGGTGGAAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGCGAGGCCGTGAGCAATATACGCACTGTTGCCGCATTTTGTTCTGAAGAAAAGATCCTTGATCTTTACGCAGACGAGCTCGTTGGTCCTTCCAAACATTCATTTCGACGTGGTCAAATTGCTGGCATATTCTATGGCATTTCACAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGTTTTAAATCAGTAATGAAGTCATTTATGGTTTTGATTGTAACCGCGCTTGCTATGGGCGAAACATTGGCACTAGCACCAGATCTTTTGAAAGGGAACCAAATGGTTGCATCCGTTTTTGAAGTAATGGATAGAAAATCAGCAATATCAGGTGATACTGGAGAAGAATTGAAGACAGTGGAAGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTTAATCTAAGAGTTCCTTCAGGCAAGAGTGTAGCCTTAGTAGGACAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCACTAATACTCAGATTTTATGATCCAACTTCAGGAAAGGTGTTAATTGATGGAAAAGACATCACAAGAATAAATATGAAATCTCTCAGAAAACACATTGGTCTAGTGCAACAAGAACCGGCTCTTTTCGCCACATCAATTTATGAAAACATTCTATATGGAAAAGAAGGTGCATCTGATTCAGAAGTAATTGAAGCAGCTAAGTTAGCAAATGCTCATAACTTCATAAGTGGTCTTCCAGAAGGTTACTCAACAAAAGTAGGTGAAAGAGGTGTTCAACTTTCTGGTGGACAAAGACAAAGGGTAGCCATTGCTAGAGCTGTTTTAAAGAATCCTGAAATATTACTTCTAGATGAAGCAACTAGTGCACTTGATGTCGAATCGGAGCGTATAGTACAACAAGCTCTTGACAGATTAATGCAGAATAGAACAACAGTTATGGTGGCACATAGATTGTCAACAATAAGGAATGCAGATCAAATCTCAGTTTTGCAAGATGGAAAGATTATTGAGCAAGGAACTCATTCAAGTCTTTTAGAGAATAAAAATGGACCATATTATAAATTAGTCAACCTTCAACAACAACAAAATCATCAATCATAA 3702 0.3906 MDSKDDERKKERKVPMLKLFSFADSYDYVLMFIGSIGACIHGASVPIFFIFFGKLINVIGLAYLFPKEASHQVAKYSLDFVYLSVAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKIRKEYVKAGEIAEEVIGNVRTVHAFAGEERAVKSYKTALMKTYINGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKKSAKTGRKLSKLDGHIQFKDVCFSYPSRPDVAIFNNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPLSGHILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPERLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADVIAVVQGGRIVETGNHEELMANPTSVYASLVQLQGASSLQRLPSVGPSLGRQSSISYSRELSRTGTSIGGSFRSDKDSIGRVGGDDGNKSNHVSAKRLYSMIGPDWPYGVIGTLCAFVAGAQMPLFALGISHALVSYYMDWETTQREVKKIVFLFCGGAVITVTVHAIEHLFFGIMGERLTLRVREKMFTAILKNEIGWFDETTNTSSMLSSRLESDATLMRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYADELVGPSKHSFRRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSAISGDTGEELKTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPSGKSVALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDITRINMKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLLENKNGPYYKLVNLQQQQNHQS 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01859 1233 ProSitePatterns ABC transporters family signature. 1127 1141 IPR017871 GO:0005524|GO:0016887
Trre9g01859 1233 FunFam ABC transporter B family member 2 789 985 - -
Trre9g01859 1233 SMART AAA_5 382 568 IPR003593 GO:0016887
Trre9g01859 1233 SMART AAA_5 1015 1201 IPR003593 GO:0016887
Trre9g01859 1233 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 355 591 IPR003439 GO:0005524
Trre9g01859 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1226 IPR027417 -
Trre9g01859 1233 ProSitePatterns ABC transporters family signature. 494 508 IPR017871 GO:0005524|GO:0016887
Trre9g01859 1233 CDD ABC_6TM_Pgp_ABCB1_D1_like 31 328 - -
Trre9g01859 1233 Gene3D ABC transporter type 1, transmembrane domain 18 957 IPR036640 GO:0005524|GO:0016020
Trre9g01859 1233 CDD ABC_6TM_Pgp_ABCB1_D2_like 658 973 - -
Trre9g01859 1233 CDD ABC_MTABC3_MDL1_MDL2 988 1226 - -
Trre9g01859 1233 Gene3D - 345 604 IPR027417 -
Trre9g01859 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 593 IPR027417 -
Trre9g01859 1233 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 669 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g01859 1233 FunFam ABC transporter B family member 4 978 1232 - -
Trre9g01859 1233 Pfam ABC transporter 1007 1155 IPR003439 GO:0005524
Trre9g01859 1233 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 988 1224 IPR003439 GO:0005524
Trre9g01859 1233 Gene3D - 978 1233 IPR027417 -
Trre9g01859 1233 PANTHER ABC TRANSPORTER B FAMILY 4 592 IPR039421 -
Trre9g01859 1233 Pfam ABC transporter transmembrane region 31 303 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g01859 1233 Pfam ABC transporter transmembrane region 670 941 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g01859 1233 CDD ABC_MTABC3_MDL1_MDL2 355 593 - -
Trre9g01859 1233 MobiDBLite consensus disorder prediction 620 645 - -
Trre9g01859 1233 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 32 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g01859 1233 SUPERFAMILY ABC transporter transmembrane region 655 969 IPR036640 GO:0005524|GO:0016020
Trre9g01859 1233 Pfam ABC transporter 374 522 IPR003439 GO:0005524
Trre9g01859 1233 FunFam ABC transporter B family member 1 18 354 - -
Trre9g01859 1233 SUPERFAMILY ABC transporter transmembrane region 19 325 IPR036640 GO:0005524|GO:0016020
Trre9g01859 1233 FunFam ABC transporter B family member 4 345 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01859 Trre-Chr9 17728111 17737420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01859 5 1232 Calmodulin-binding Proteins AT2G36910 50.080 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01859 K05658 - gmx:100819045 2167.12