Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01857 ATGGCCAGAGCTTTAGATTTCATTAAGGATATCAACGATGGAAAGGAACTTTGGAAATTTGTTGTCCGACTCGAAGATATTTGGAAAATTGGTATAGGGAAAGGTGAACACTTGGAGTTTCTCATTCTCGACAAACAGGGAGATAACATTCAGGTTGTTCTTCCATCTGATCTTTGCCCTTTGTTTGGGCCTAAACTTGAAGAAGGAGCCACATACATTATGAAAAATTTTAAAGTTCAGCCAAATGATTTGAAGGTCAAATTTTGTGATCACCCTTTCACTTTGGTTGGATTTGCCGGTGAAGGAGGATCTGATATTATTCCAACAAAGATACCAAACATTCCCAAATATAAGTTTAATTTCAAATTTTTTGATGATATCAAACATGGCAAGTACCGCGCTGATATGTTAGTATATATCATAGGTGCTGTGCATGAGGTTAAACCGGATAAAAAATCATTTGGGACAAAGAAACTCCCAACTACCTTTTCTTTGGCTGATGCGTCGATGAACATACTTACATGCTCTTTATGGGGTAATGGCTAG 546 0.3736 MARALDFIKDINDGKELWKFVVRLEDIWKIGIGKGEHLEFLILDKQGDNIQVVLPSDLCPLFGPKLEEGATYIMKNFKVQPNDLKVKFCDHPFTLVGFAGEGGSDIIPTKIPNIPKYKFNFKFFDDIKHGKYRADMLVYIIGAVHEVKPDKKSFGTKKLPTTFSLADASMNILTCSLWGNG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01857 181 CDD RPA1_DBD_A_like 22 93 - -
Trre9g01857 181 SUPERFAMILY Nucleic acid-binding proteins 7 96 IPR012340 -
Trre9g01857 181 Gene3D - 5 99 IPR012340 -
Trre9g01857 181 Gene3D - 113 181 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01857 Trre-Chr9 17717818 17718795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01857 33 180 Core DNA Replication Machinery Family AT5G45400 25.309 5.71e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01857 - - psat:127082041 124.79