Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01854 ATGAACGGGAGACACCACCGCCACCACCAACAACAACATCACCGCGCCAAATCAAAACTCCGCTACGTCAACAAATCCGAACTTGTTGTTTCTTCATCTAATTCTGTCTCAGATGTTGAAAAACGAGTTTCCCCTGAAGATGTTAATGTCAACAGTAACAACATCAACAACAACGTTGATGACGTGGCTAGTTCAAGCAAGACCAAGGAAGAAGATAATGATGATGGTATTGATATTATGGATGATAGGCTTGATAAGTTGTTAAGTGATATTCAACAACCTGAATTATCTCAGGAACAGATCATAATCAATGATCAATTGCAGCAAGATGAGTTGCTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCAACCTTGATTCATGGAAAGGTCTGCGCTGTTTTCAGATACACATAAACATCGATATTTTGGGTGAAATAGGCATTACTGCTAAGGTGAACTCTGTCAATGAAGTTGAAACTATAAGTGGCAATTCAGATGATTTCTTATACTCTTTCAAAGTTCAATACCTTCCACCGATTGTTTTGACATGTTTATTACCTAAGTCATATCCGAGCCACCAACCACCTATATTTACAATCTCTGTTAAGTGGTTGGAATCTGCGAAGATTTTGAGTTTATGTTCCATGTTGGATTCAATATGGACAGAACAGCAAGGGCAGGAAGTAATTTACCAATGGGTAGAATGGTTACATAGTTCTTCACTTTCTCATCTGGGATTTGATGAGGAGATTAGACTAGGTCCTTACGGTACGAATCGTGTTGCGGACGCGCGTGTGGTTTCAGGTATTGGATGCATTGATGCTGATATTCCTTTCTTACAAAGCTACAACAATGAGAGACGCCATCAAAATTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACTGAGTTCGTCCAGTTACCATGCAAACATTTCTTTTGCCGCAAATGCTTGCAGACCTTTACTCAGATACACGTAAAAGAAGGAAACGTTAGTAATCTTCAATGTCTTGATGCAAAATGCAAGGACATGATTCCACCAGGCCTTTTAAAACACTTTCTTGGTGACGAAGATTACGAACGTTGGGAATCAATGATGTTAGAGAAAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAACATGCTCAATGCACTAAATGCTTTTTTAGCTTTTGCACCCTTTGTAGAGAACGGCGCCATGTTGGCATAGCATGCATGACACTGGAAATGAAGCTTCAGCTTCTACAGGATCGTCAAAATTCATCTCAATTAAAAGGAAATCAAAGGCAACTTGAACTTGAAAAGATCAACGAAATGCTCAGCGTGAGAGAAATTCGCCGCGATTCCAAGTTGTGCCCGTATTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAATAAAATGAAGTGTGGTAATTGTGGAGAGTACTTCTGTTACCGTTGTAACAAACCACTTGATGCATCAGATCCATATGGACATTTCAGGGACGAGGGGTCATGTGAATTGTTCCCACGAGAAATGGTTGAGAACTGGCAAGCAGCACACATAAATCCTCGCCAGGAAATACAACAAATACATGCTGAACTCTTTCACCTCGGTGGCTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAGATGGGAAACAATAATCACATGTTATGTTGGGCATGCCAAAGCCATTACTGCTATTTATGCAACGAGATTGTGAGGCGCGGCAGTAAGCATTATGGACCAAAAGGTTGCAAACAGCACAGTGAGGGATAA 1830 0.4016 MNGRHHRHHQQQHHRAKSKLRYVNKSELVVSSSNSVSDVEKRVSPEDVNVNSNNINNNVDDVASSSKTKEEDNDDGIDIMDDRLDKLLSDIQQPELSQEQIIINDQLQQDELLVVESIYGENVFNLDSWKGLRCFQIHINIDILGEIGITAKVNSVNEVETISGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESAKILSLCSMLDSIWTEQQGQEVIYQWVEWLHSSSLSHLGFDEEIRLGPYGTNRVADARVVSGIGCIDADIPFLQSYNNERRHQNFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGNVSNLQCLDAKCKDMIPPGLLKHFLGDEDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCTKCFFSFCTLCRERRHVGIACMTLEMKLQLLQDRQNSSQLKGNQRQLELEKINEMLSVREIRRDSKLCPYCDMAISRTEGCNKMKCGNCGEYFCYRCNKPLDASDPYGHFRDEGSCELFPREMVENWQAAHINPRQEIQQIHAELFHLGGSACPSCRQFNVKMGNNNHMLCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHSEG 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01854 609 MobiDBLite consensus disorder prediction 1 20 - -
Trre9g01854 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 383 IPR013083 -
Trre9g01854 609 SMART ring_2 300 347 IPR001841 -
Trre9g01854 609 SMART ring_2 388 476 IPR001841 -
Trre9g01854 609 SMART ring_2 558 587 IPR001841 -
Trre9g01854 609 SUPERFAMILY RING/U-box 460 515 - -
Trre9g01854 609 MobiDBLite consensus disorder prediction 33 76 - -
Trre9g01854 609 SUPERFAMILY UBC-like 105 240 IPR016135 -
Trre9g01854 609 ProSiteProfiles Zinc finger RING-type profile. 300 344 IPR001841 -
Trre9g01854 609 Gene3D Ubiquitin Conjugating Enzyme 97 246 IPR016135 -
Trre9g01854 609 FunFam RBR-type E3 ubiquitin transferase 295 379 - -
Trre9g01854 609 FunFam RBR-type E3 ubiquitin transferase 441 552 - -
Trre9g01854 609 SUPERFAMILY RING/U-box 368 431 - -
Trre9g01854 609 ProSiteProfiles RWD domain profile. 110 245 IPR006575 GO:0005515
Trre9g01854 609 SMART ibrneu5 368 426 IPR002867 GO:0008270
Trre9g01854 609 SMART ibrneu5 455 521 IPR002867 GO:0008270
Trre9g01854 609 CDD BRcat_RBR_RNF14 379 430 - -
Trre9g01854 609 SUPERFAMILY RING/U-box 295 379 - -
Trre9g01854 609 ProSitePatterns Zinc finger RING-type signature. 317 326 IPR017907 -
Trre9g01854 609 MobiDBLite consensus disorder prediction 46 63 - -
Trre9g01854 609 SMART RWD2001b 110 245 IPR006575 GO:0005515
Trre9g01854 609 ProSiteProfiles TRIAD supradomain profile. 296 527 IPR044066 -
Trre9g01854 609 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g01854 609 CDD Rcat_RBR_RNF14 458 524 IPR047548 GO:0008270
Trre9g01854 609 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 134 520 IPR031127 GO:0004842|GO:0016567
Trre9g01854 609 SUPERFAMILY RING/U-box 546 606 - -
Trre9g01854 609 Gene3D - 426 552 - -
Trre9g01854 609 CDD RING-HC_ITT1-like 294 353 - -
Trre9g01854 609 Pfam IBR domain, a half RING-finger domain 368 426 IPR002867 GO:0008270
Trre9g01854 609 Pfam IBR domain, a half RING-finger domain 463 506 IPR002867 GO:0008270
Trre9g01854 609 Pfam RWD domain 106 240 IPR006575 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01854 Trre-Chr9 17678473 17684228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01854 295 518 ARIADNE family AT3G27710 22.917 7.14e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01854 K11971 - gmx:100500662 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01854 9 17678473 17684228 Trre9g01854 9 17678473 17684228 ECH