Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01848 ATGGATGGAACCAGCGGCGTCACTGGCGGCGGAGACGGTTCATCCCATTTACCGACGCCGACACCGATGCAAAACTCAAACGCGCCTCCACCGTTTTTGAGCAAAACGTATGATATGGTTGATGATTCTTCTACGGATGCGATAGTTTCATGGAGCGCAACGAACAACAGTTTCGTTGTTTGGGACCCACCGGAATTCGCTAGGGACCTTTTGCCTAAGTATTTCAAGCATAATAACTTCTCAAGCTTCGTTCGACAGTTGAATACTTATGGTTTCAGGAAGGTTGACCCAGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTACTTAAGAGTATAACTCGACGAAAGCCTGCTCATGGTCCTAATAATCAACAGGCTCAGCAGCTGCATGGGCAGAGTTCATCTGTAGGGGCATGTGTAGAAGTCGGAAAATTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAGAATGTTCTGATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAACCACTGATAGCCAGTTGCAAACAATGACTCAGCGCCTTCAGGGAATGGAGCAACGGCAACAGCAAATGATGTCATTCCTGGCCAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTGCAGCAGCAAAATGACAGCAATAGGCGCATAACTGAAGTCAATAAAAAGCGTCGGCTCAAGCAGGATGGTATTGCCGAAACAACTGAGCGAGCTGCCCCTCCTGATGGACAGATTGTTAAGTATCAACCTATGATGAATGAAACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACTCCCCGTGTAGAATCTTATAGTAAAAACCCTGATAATTACTTGATTGGAGACGGTACATCACCGTCCAGTGCAATGGACAGTAGTAGCTCATCGAGCTGGAATTCTGGAGTAACTCTTCAAGAGGTTCCTCCATCTTCAGTGCAGTCTTCTCAATTTCCAGCCGCAACAGGGACACAAGGACACATACCCTCGGCAGAAAATCCTGAAATTCTATCTGTACCTCAAGCTGCAGCAGCATCGGAAAATGTTATGAAAGATGGAGCTTGTGCCACACCAACTATTCCAACTTCTCAAGCTGATGTTATCATGCCTGATATACGTTCAGTACCAGAGGTTGTTCCAAGAAGTATTCTCGATATTCCTGAAGACAATTATATGGCTCCCGGGACAGATGATGGATTTATGGATCCGACTTCACTTGGGTCATTTCCCCTTGATTTTGATGATCTTTCACCTGGCGCAGACATTGATGATTTGTTAAACAATCCTATTTGGGATGATTTTTTGCAAACTTCAGCACCAGAGGATCTTGAGACCAATGTTGACGAAATATCCAGAGGGAATGAGGTGCAGCCAACAGAAAATGGATGGGACAATACTCAACACCTGGATCAACTAACAGAACAGATGGGTCTTCTTTCTTCTGATGTCAAAAGAATTTAA 1506 0.4509 MDGTSGVTGGGDGSSHLPTPTPMQNSNAPPPFLSKTYDMVDDSSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGPNNQQAQQLHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMTQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTERAAPPDGQIVKYQPMMNETAKAMLRKIMKWDTPRVESYSKNPDNYLIGDGTSPSSAMDSSSSSSWNSGVTLQEVPPSSVQSSQFPAATGTQGHIPSAENPEILSVPQAAAASENVMKDGACATPTIPTSQADVIMPDIRSVPEVVPRSILDIPEDNYMAPGTDDGFMDPTSLGSFPLDFDDLSPGADIDDLLNNPIWDDFLQTSAPEDLETNVDEISRGNEVQPTENGWDNTQHLDQLTEQMGLLSSDVKRI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01848 501 FunFam Heat shock transcription factor 1 25 122 - -
Trre9g01848 501 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g01848 501 MobiDBLite consensus disorder prediction 1 31 - -
Trre9g01848 501 SUPERFAMILY "Winged helix" DNA-binding domain 28 121 IPR036390 -
Trre9g01848 501 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g01848 501 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g01848 501 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g01848 501 MobiDBLite consensus disorder prediction 287 347 - -
Trre9g01848 501 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g01848 501 Coils Coil 150 177 - -
Trre9g01848 501 MobiDBLite consensus disorder prediction 293 346 - -
Trre9g01848 501 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g01848 501 Gene3D - 24 122 IPR036388 -
Trre9g01848 501 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 312 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01848 Trre-Chr9 17585634 17589139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01848 9 495 HSF AT1G32330 55.010 1.75e-170 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre9g01848 HSF_DNA-bind 4.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01848 K09419 - gmx:100794897 746.117