Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01847 ATGGCCATGTATCACCACTACTACTCGAGCACTCAATACAATAAGAAAGACATTGAAGAACAACTTACTTATGTACCACATGATGCACTACAAAATTTGGAATGCTACCCTACTTTTTCAGAAACCTTGGAGGAAAGTTTGCAAGGAGATTTGAATTATTTGCTCTTTTGTGACACTCATGAGAAAGAAACTCAAGGAAGAACACAAGAGAATATGTCAAATATTCAAATAAATCAAGAGAGCAACATTGATACAAGTTTGCAAGAGGATATGAATTATTTGCCTTTTTGTGACACTAATGAGAAAGAAACTCAAGGAATAACACAAGAGAATGTGTCAAATATTCAAGAGAGCAATATTGATACAAGTTTGGAAGAGGAATTGAATTATTTGCTCTTTTGTGACACTCATGAGGAAGAAACTCAAGGAATAACACAAGAGAATGTGTCCAATATTCAAATAAATCAAGAGAGCAATATTGATACAAGTTTGCCTAATATTCCTATCATGAATCATGAGAATCTTCCAAAGAATAACAAGAAGTCTTGTTCTATTAAGAAGAGTAAAGATAAGTGTCTCAAAGTAAAGAGCAAAGATAAATATAAAGACAGAATTTGTAGTCATTGTAAGACTAAAGACACTACTCAATGGAGGTTTGGTCCTTTGGGGAGAAATACTTTATGCAATGCTTGTGGATTGAGATACAAGTCAAATCGATTGATGGAAGGGTATAAACCTAAGGCAAGTTCAAATCTTGATATGTTAAAAGGATTCAGATTTTCACATCTTGTTACAAAAGAAGGATAA 807 0.3309 MAMYHHYYSSTQYNKKDIEEQLTYVPHDALQNLECYPTFSETLEESLQGDLNYLLFCDTHEKETQGRTQENMSNIQINQESNIDTSLQEDMNYLPFCDTNEKETQGITQENVSNIQESNIDTSLEEELNYLLFCDTHEEETQGITQENVSNIQINQESNIDTSLPNIPIMNHENLPKNNKKSCSIKKSKDKCLKVKSKDKYKDRICSHCKTKDTTQWRFGPLGRNTLCNACGLRYKSNRLMEGYKPKASSNLDMLKGFRFSHLVTKEG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01847 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 245 - -
Trre9g01847 268 SMART GATA_3 200 250 IPR000679 GO:0006355|GO:0043565
Trre9g01847 268 Pfam GATA zinc finger 206 241 IPR000679 GO:0006355|GO:0043565
Trre9g01847 268 Gene3D - 195 254 IPR013088 GO:0006355|GO:0008270
Trre9g01847 268 PANTHER GATA TRANSCRIPTION FACTOR 138 249 - -
Trre9g01847 268 ProSiteProfiles GATA-type zinc finger domain profile. 200 238 IPR000679 GO:0006355|GO:0043565
Trre9g01847 268 CDD ZnF_GATA 205 241 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01847 Trre-Chr9 17580910 17581716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01847 150 252 C2C2-Gata Transcription Factor Family AT3G45170 36.207 3.81e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre9g01847 GATA 7.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01847 - - tpra:123892034 177.948