Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01846 ATGCTGGTTCGAGTCCTAGAAGGGGAAGATCAAGTTCCTCCACCCCAAGGCCAAGAGCCACTTGCTGCTTGTGCCTCATGCAAATATGACAAGAGAGGATGCCACATTTATTGCACGTTTAGACCTTATTTCCCTCCTGGAAACATATTGGATTTTGAAAATGTTCATAGAACTTTTACACGACATAACGTCGGAACATGGATTAGAGCTAGGCAAAACGAACAGGAGAGAGTAGATTTGGTTACTGCTGTGAGGTGGGAAGCAGCTCGTCGTAGAGACGATCCCATCCTCGGGAGTCATGGGATTCATTTGGAGCATCTAGCGCAAATTGAGGATTTAGAAGCTGCAAACGCAGCCTTGGTAGCTCAATTAAACAACAATGGTAACAACAATGGAAATGGAGGAAACAATGGTAACAACAATGCAGGGCCAGCCCAAGATAAAGTGAGGCCTAAAGCGAACATTAATATGAGGCCTAATATGATTTTTCGCCGAATATAA 501 0.4411 MLVRVLEGEDQVPPPQGQEPLAACASCKYDKRGCHIYCTFRPYFPPGNILDFENVHRTFTRHNVGTWIRARQNEQERVDLVTAVRWEAARRRDDPILGSHGIHLEHLAQIEDLEAANAALVAQLNNNGNNNGNGGNNGNNNAGPAQDKVRPKANINMRPNMIFRRI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01846 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 129 - -
Trre9g01846 166 Coils Coil 110 130 - -
Trre9g01846 166 MobiDBLite consensus disorder prediction 127 144 - -
Trre9g01846 166 MobiDBLite consensus disorder prediction 127 153 - -
Trre9g01846 166 ProSiteProfiles LOB domain profile. 22 124 IPR004883 -
Trre9g01846 166 Pfam Lateral organ boundaries (LOB) domain 23 118 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01846 23 142 AS2 family AT1G06280 33.333 5.37e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g01846 LOB 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01846 - - tpra:123922379 92.4337