Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01841 ATGAATCATGAGAATCTTCCAAAGAATAACAAGAAGTCTTGTTCTATTAAGAAGAGTAAAGATAAGAGTCTCAAAGTAAAGAGCAAAGATAAATATAAAGACAGAATTTGTAGTCATTGTAAGACTAAAGACACTACTCAATGGAGGTTTGGTCCTTTGGGGAGAAATACATTATGCAATGCTTGTGGATTGAGATACAAGTCAAATCGATTGATGGAAGGGTATAAACCTAAGGCAAGTTCAAATCTTGATATGATACAAGGATTCCGATTTTCACATCTTATGACAAAAGAAGGATAA 300 0.33 MNHENLPKNNKKSCSIKKSKDKSLKVKSKDKYKDRICSHCKTKDTTQWRFGPLGRNTLCNACGLRYKSNRLMEGYKPKASSNLDMIQGFRFSHLMTKEG 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01841 99 ProSiteProfiles GATA-type zinc finger domain profile. 31 69 IPR000679 GO:0006355|GO:0043565
Trre9g01841 99 MobiDBLite consensus disorder prediction 1 22 - -
Trre9g01841 99 Gene3D - 26 87 IPR013088 GO:0006355|GO:0008270
Trre9g01841 99 CDD ZnF_GATA 36 90 IPR000679 GO:0006355|GO:0043565
Trre9g01841 99 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 30 76 - -
Trre9g01841 99 SMART GATA_3 31 81 IPR000679 GO:0006355|GO:0043565
Trre9g01841 99 Pfam GATA zinc finger 37 72 IPR000679 GO:0006355|GO:0043565
Trre9g01841 99 PANTHER GATA TRANSCRIPTION FACTOR 19 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01841 Trre-Chr9 17463188 17463487 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01841 15 87 C2C2-Gata Transcription Factor Family AT3G60530 45.946 1.80e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre9g01841 GATA 1.4e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01841 - - tpra:123892034 114.39