Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01829 ATGAGTTTTCAGGACATACAATCCGGCCGGAGAAACCTAATCAACGGCAAACAAGACCCGACACAAGCGGTGGCTTCCGGCGTATTCCAGATCAACACCGCCGTCTCCACTTTTCAGAGACTCGTTAACACTCTCGGAACCCCCAAAGACACGCCAGAGCTTCGCGAGAAACTGCACAAGACGAGACTTCATATTGGACAATTGGTTAAGGATACTTCTGATAAACTTAAGCAAGCTAGTGAAATTGATCATCATGCTGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCCAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCTGCTGAGAGGGAGACAGCTTACACTCCTTTTGTTCCACAAGGAGTTCAGCCATCCAGCTATACAGTCAGCGAAGCAGGTGTTAGTTCCGATAAAAGTCAAGAACAGCAAGCCCTTCTTGTGGAATCCAGAAGACAGGAGGTTATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATAGGTGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGACCAACATTGAGAATTCTCATGAAGCTACTGTCCAAGCAAAATCGCAACTTGTTCAAGCTTCAAAGACACAAAGATCAAATTCATCTTTGGCGTGCTTGCTTCTGGTGATATTTGGAATTGTGCTTCTCATCATCATCATTATTGTTGCTGCTTAG 807 0.4325 MSFQDIQSGRRNLINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHADVNATKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQGVQPSSYTVSEAGVSSDKSQEQQALLVESRRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGTNIENSHEATVQAKSQLVQASKTQRSNSSLACLLLVIFGIVLLIIIIIVAA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01829 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre9g01829 268 SMART SynN_4 8 122 IPR006011 GO:0016020
Trre9g01829 268 Gene3D - 15 128 - -
Trre9g01829 268 CDD SynN 18 135 IPR006011 GO:0016020
Trre9g01829 268 FunFam Syntaxin-22 like 15 128 - -
Trre9g01829 268 PANTHER SYNTAXIN 22 261 IPR045242 -
Trre9g01829 268 SMART tSNARE_6 170 237 IPR000727 -
Trre9g01829 268 FunFam Syntaxin-22 like 168 268 - -
Trre9g01829 268 Pfam SNARE domain 212 263 IPR000727 -
Trre9g01829 268 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Trre9g01829 268 CDD SNARE_Qa 178 236 - -
Trre9g01829 268 Gene3D - 169 268 - -
Trre9g01829 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Trre9g01829 268 SUPERFAMILY t-snare proteins 17 230 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01829 Trre-Chr9 17365089 17368380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01829 1 256 SNARE and Associated Proteins AT5G46860 76.923 1.49e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01829 - - gmx:547656 397.512