Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01819 ATGGAGCTATTTCCAGCACAACCAGATTTATCTTTGCAAATTAGTCCTCCAAACACAAAACCATCAACAACATCAAATTGGAAAAGAACATCAACAGAAGAAGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCTAGAAACTCTTTATCATCATCAAGAAATGATAACTCTTTTGACCTTTCTCTTTCAAATCCAACAAGGTCTTTAGATTCAAACAATAACACTTCTTCAAATAATCTCATTCATCATCACTTCCAAAATAGTGGTAGTAATAATAATGCAAACAACCCTTTTCAATCTTTTCAACAAAATCATTACTTTCAACACCCCCAACAACTCTTTCAACACCACCAGCCACAACATCAACAACATCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTATCATTCCCTCAACTTCATAATCATAATCATAATCATAATCATAATCTTAATCATCATCTTAATCATGTTTTAGATGGTTCTACTACTACTACTACTACACCTTCTTCTATTTCTAACACAAACACAAGTTCAAGCACTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTTCCTGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACAACGACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGGGCTACCCCAAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTTACATTAGCACATGTTAAGTCTCATTTACAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGGCAATCAGATGTATATGATAATGGATCATCTGGAGATAATTCTGATGATATAATGTTTGACATCAATTCTTCAAGAAGATCATCTGAACTATCCATTAAACCGCAAGGAAGATCGAGTGTTAATCAAGATAAGGAATGTTATGGTCTATGGAGTAACTCTTCTAGGGAAGCTTGGTTACATGGTAAACCAAAGATTGATTCTATTGGAAACATGCAATCTCTTGAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGAAGTTCATCAACAAACTTATCTGGATCAAGCCCTAAGAAACCTAATTTGGATTTGGAATTCACCTTAGGACAACCTTCTCTTTGA 1215 0.3605 MELFPAQPDLSLQISPPNTKPSTTSNWKRTSTEEEMDLGFWKRALDSRNSLSSSRNDNSFDLSLSNPTRSLDSNNNTSSNNLIHHHFQNSGSNNNANNPFQSFQQNHYFQHPQQLFQHHQPQHQQHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNHNHNLNHHLNHVLDGSTTTTTTPSSISNTNTSSSTFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSELSIKPQGRSSVNQDKECYGLWSNSSREAWLHGKPKIDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPSL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01819 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 221 274 IPR006447 GO:0003677
Trre9g01819 404 MobiDBLite consensus disorder prediction 175 199 - -
Trre9g01819 404 SUPERFAMILY Homeodomain-like 218 274 IPR009057 -
Trre9g01819 404 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 403 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre9g01819 404 FunFam Myb family transcription factor 219 277 - -
Trre9g01819 404 Gene3D - 220 277 - -
Trre9g01819 404 MobiDBLite consensus disorder prediction 1 33 - -
Trre9g01819 404 MobiDBLite consensus disorder prediction 370 404 - -
Trre9g01819 404 MobiDBLite consensus disorder prediction 279 305 - -
Trre9g01819 404 MobiDBLite consensus disorder prediction 48 101 - -
Trre9g01819 404 MobiDBLite consensus disorder prediction 11 29 - -
Trre9g01819 404 MobiDBLite consensus disorder prediction 373 391 - -
Trre9g01819 404 Pfam Myb-like DNA-binding domain 222 273 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01819 Trre-Chr9 17225416 17230901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01819 1 404 G2-like Transcription Factor Family AT4G17695 39.216 1.76e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre9g01819 Myb_DNA-binding 2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01819 - - psat:127119781 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01819 9 17225416 17230901 Trre9g01819 9 17225416 17230901 ECH
Trre9g01819 9 17225416 17230901 Trre15g02008 15 16257047 16263979 PCT