Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01818 ATGGTGGAAGGAGGAAGAGTACGATTGTCCGAGGAAGCTAGAAATGGGTTAGAAGTGTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCCAACACTGCCACACAGGCGAGTGTTGCTAACATGACGAATAGAAGTGGAGGAGATGCTTTGAGAGCTTCAGCTCCATGTGGTCCGAGATTGCATGGTAATCCGGATGTCTTTTTCAAGCGGAAGGTGGCTAAGTTTGATACAAGTGATTTGGAATGGACTGATAAAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAAGAATTTGAAGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTCTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTCCGTGATTATGAGAAAATGGCGAACAAGGTGTTTGCACGAAGATATTGCAGCTCTGGTTGTCTTCCTGCCACTTACTTGGAAAAGGAGTTTTGGCATGAAATTGGTTGCGGGAAAATGGATACCGTTGAATATGCTTGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAGCTTTCCCGGTTGCCAAAATCAACTCTGCGTCTCTTGGAAACTTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCATGGCACGTGGAGGATCATTATTTGTACAGCATTAACTATCAGCACTGTGGGGCGTCAAAAACATGGTATGGTATCCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGGGAGCATGTATATTCTACTGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCTTGGGGAAAACAACTTTATTTCCACCTAATATTTTGTTGGAGCATAAAGTCCCTGTCTACAAGGCTGTCCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTAAATTTTGCACTTGGTGATTGGTTTCCTCTTGGGGCAATTGCGAGCAGGCGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCGATGCATATTCATACATCCATGGAAGTTGAAGATTCAGGCTTTCCCTCTTCAGACTTGCTTTCTCATAATAGAACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAACATTGTGCCAGTTGGTTACTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCTCATTCACATGGCACAATTCTCTGTAGCCTGTGCAAACGTGACTGTTATATAGCCTATGTTGATTGCAGCTGTCACATGCATCCTGTGCATCCTGTATGCCTACGCCATGATGTTAAATCTCTTGACTTCACCTGTGGGAGAAAATACACTCTTTATTTGAGAGAGGATATTGCGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAAGAAGATGGGATATTGGATGAGATAAGCAAGCAATCCAAAAGTGACCGAGATATGTACTCATATCCTTTGTCAGATATGTTTCAGAGAGCTGAAGCAAATGGATACGAACCTTATTGTGAGCTTAAACTTGATTCTATGATTGAATTTTATACCACTCCAGAACAGGCAACAAATAATCAAGAGTATGGCACACAAAGTCAATTTGTTTTGGGACCTTGCTCAGAAGTTCATACACCGGAACCGTCTGAGATTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACCTCTTGACTGTTCCTCTGCTCCCAAAAATGCTGAGGAGCAAGCTAACTTGAAAATGGAGATTATTGATTTCGAAGAACTTGGCGAAACAATATCCAACAGTGCATTCAAATCTTCGCTATCCCCTGCTCTGTATCATGAAAGCTCCGCTAAACTGCATGATCTTCAGAAACCGGTCACAAAACCCATAGTGGATAACGACAGTGATGATTCTGATTCAGGGATATTTAGGGTAAAGCGACCTTCGTCTCTGAAAGCAGAGAAAAGAAATGCGAAGGTTGCTGCTTCGAAGCATTCTGAGCAGCAGGGACTTAAGCGATTGAAAAAAGTCCTTCCTGAAGGAAAAAGCAGGCAACAAATGAATTTCAGAATCAGTGAATTAAGCTACAAACAAAACCCTGTTAGTCATAAAGTTGATATCGAAATTTCATCAAAGGACAGATTTGCAAGGGGAAATGGTGCTCCCATTTCTGTAAGATATAAAAAGTCAAGCAATGAAGACGCAAGCATCCATATGCAACAAGATCACCACCGGAGAGAGAGGTTTCAGCAAACTTATAGGGAAGCACCTTCCATTGAGACTGGGCCAAAGCGACTTAAAGTCCGAGGCCCTTCATTCTTAGGCTTAGAGAGCAGGTTGAATTGA 2577 0.4203 MVEGGRVRLSEEARNGLEVLKRKRLQRAQSNTATQASVANMTNRSGGDALRASAPCGPRLHGNPDVFFKRKVAKFDTSDLEWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDYEKMANKVFARRYCSSGCLPATYLEKEFWHEIGCGKMDTVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYSTDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMHIHTSMEVEDSGFPSSDLLSHNRTKISFINLLRFQHCASWLLMKSRACTSVSSHSHGTILCSLCKRDCYIAYVDCSCHMHPVHPVCLRHDVKSLDFTCGRKYTLYLREDIADMEAAAKMFEQEDGILDEISKQSKSDRDMYSYPLSDMFQRAEANGYEPYCELKLDSMIEFYTTPEQATNNQEYGTQSQFVLGPCSEVHTPEPSEISFSAASTLCSLSEPLDCSSAPKNAEEQANLKMEIIDFEELGETISNSAFKSSLSPALYHESSAKLHDLQKPVTKPIVDNDSDDSDSGIFRVKRPSSLKAEKRNAKVAASKHSEQQGLKRLKKVLPEGKSRQQMNFRISELSYKQNPVSHKVDIEISSKDRFARGNGAPISVRYKKSSNEDASIHMQQDHHRRERFQQTYREAPSIETGPKRLKVRGPSFLGLESRLN 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01818 858 Pfam C5HC2 zinc finger 486 540 IPR004198 -
Trre9g01818 858 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Trre9g01818 858 SMART JmjN_1 88 129 IPR003349 -
Trre9g01818 858 MobiDBLite consensus disorder prediction 26 47 - -
Trre9g01818 858 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Trre9g01818 858 MobiDBLite consensus disorder prediction 26 49 - -
Trre9g01818 858 FunFam Lysine-specific demethylase isoform A 84 433 - -
Trre9g01818 858 MobiDBLite consensus disorder prediction 830 858 - -
Trre9g01818 858 Gene3D Cupin 89 448 - -
Trre9g01818 858 SMART cupin_9 233 406 IPR003347 -
Trre9g01818 858 Pfam jmjN domain 90 122 IPR003349 -
Trre9g01818 858 SUPERFAMILY Clavaminate synthase-like 167 428 - -
Trre9g01818 858 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 788 - -
Trre9g01818 858 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01818 Trre-Chr9 17181236 17187578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01818 86 548 JUMONJI Transcription Factor Family AT1G30810 31.793 3.75e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre9g01818 JmjC 2.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01818 - - psat:127119779 1529.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01818 9 17181236 17187578 Trre9g01818 9 17181236 17187578 ECH