Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01817 ATGCCTTTTCAACCCTTTCCTTCTTCCATGAAAGAAGAAGATGGAATGCTGAGAGGGAAAGAAGAGATAATGGATCAAAGTGGCTCGGGTAGCGAACAAGTTGAAGATAAGTCGGGGAATGAACAAGAAATTAATAATGAACAAGAAACTACGAAGAAAAAACGTTATCATCGACACACTGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCTCACCCAGATGATAAACAAAGAATGAAACTAAGCCATGATTTGGGATTAAAACCACGGCAAGTCAAATTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAAAATGAGAATTTAAAGAATGAGAACTATCGGCTACAAGCAGCGTTACGAAATATTATGTGTCCAAATTGTGGTGGGCCATGTATAATGGGCCCTGATATGGGCTTGGATGATCATCAACTTCGACTTGAAAATGCCCGGTTAAGAGAAGAGCTAGATCGTGTGTGTTGTATAACATCAAGATACACCGGTCGCCAAATTCAAACAATGGCACCACCATCTCTAATGCAACCATCATTGGACTTAGACATGAACATATACCCAACAAGACACTTTTCTGATCAAATCACACAATGCACAGAAATGATTCCTGTCCCTATGTTACCACTTGAACCTTCACATTTTCAAGATGGTGGTCTCTTATTATTAGAAGATGAGAAATCACTTGCAATGGAACTTGCAGCTTCTTCTATGACTGAACTTGTTAAGATGTGTCAAATGAACGAACCGCTTTGGATTCGAAACGGTGAAAATGATAGGGAAGTTCTTAATTTTGATGAGCATGCTAGACTTTTTTCATGGCCTTTGAATCTTAAGCAGAGAAGTGAGTTAAGGACAGAAGCTACACGTGATTCTGCTGTTGTTATTATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGTTGGAATTATTTCCAACAATTGTTGCTAGAGCAAGAACTGTTCAAATTATAGCTTCTGGTGCTTCTGGTCATGCAAGTGGAACTCTTCAGCTGATGCATGCAGAATTCCAAGTTCTTTCTCCATTGGTATCGACTAGAGAGACTCATTTTCTTCGGTATTGTCAGCAAAATGCAGAGGAAGGAACATGGGCCATTGTAGATTTTCCTGTTGAATCCTTCCACCAAAATTTTCACAATTCTTATCCCAAATACTGCAGAAGATCTTCTGGCTGTGTCATTCAAGATATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAACATGCAAAAGTTGTAGAGAAACCTGTTCATCAAATATTGAGCAACTATGTGTATAGTGGAATGGCATTTGGCGCGCAACGTTGGTTAGGAGTTTTGCAAAGACAATGTGAAAGGGTTGCTAGCCTCATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCCGGAAGCGCGAAAGAACTTGATGAAACTAGCTAACAGGATGATAAAAACTTTTAGTCTTAATATGACAACTTATGGTGGCCAATCATGGACTGCTATATCAGATTCACCAGAAGACACTGTTAGAATCACAACTAGAAAAATCACTGAACCTGGCCAACCTAATGGTGTGATTCTCGCTGCGGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAAGTTTTTGATCTCCTCCGCGATGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTTGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTTGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTACAAGAAACTTGCACAGATCAATCTGGAAGCTTAGTAGTCTACACGACAATCGATGTTGATTCGATCCAGCTAGCCATGAGTGGGGAAGACCCTTCATGCATTTCACTTCTTCCACAAGGATTCATGATAGTACCAATGGACTCATCAAACACTGAGACATCATCTGAACAAGGTGTGACAGGAACACCATCATCAACAACTAGTGCTGCTTCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCATCTCTGCAATACCTTGCATCAAATTGAAGGTGCTCTTTGTAGCACCACTAACAACAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACAAGTGCACCTTCCAAGTAG 2301 0.4024 MPFQPFPSSMKEEDGMLRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQETTKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENENLKNENYRLQAALRNIMCPNCGGPCIMGPDMGLDDHQLRLENARLREELDRVCCITSRYTGRQIQTMAPPSLMQPSLDLDMNIYPTRHFSDQITQCTEMIPVPMLPLEPSHFQDGGLLLLEDEKSLAMELAASSMTELVKMCQMNEPLWIRNGENDREVLNFDEHARLFSWPLNLKQRSELRTEATRDSAVVIMNSVTLVDAFLDAQKWLELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVESFHQNFHNSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQILSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTYGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQETCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCISLLPQGFMIVPMDSSNTETSSEQGVTGTPSSTTSAASANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALCSTTNNNCFVGSCNEPTTSAPSK 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01817 766 Gene3D - 37 121 - -
Trre9g01817 766 MobiDBLite consensus disorder prediction 36 54 - -
Trre9g01817 766 CDD START_ArGLABRA2_like 248 477 - -
Trre9g01817 766 SMART HOX_1 51 114 IPR001356 GO:0003677
Trre9g01817 766 MobiDBLite consensus disorder prediction 1 59 - -
Trre9g01817 766 Coils Coil 109 139 - -
Trre9g01817 766 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Trre9g01817 766 ProSiteProfiles START domain profile. 244 481 IPR002913 GO:0008289
Trre9g01817 766 FunFam Homeobox-leucine zipper protein HDG1 38 126 - -
Trre9g01817 766 MobiDBLite consensus disorder prediction 673 693 - -
Trre9g01817 766 Pfam START domain 254 478 IPR002913 GO:0008289
Trre9g01817 766 SUPERFAMILY Homeodomain-like 42 111 IPR009057 -
Trre9g01817 766 SUPERFAMILY Bet v1-like 246 480 - -
Trre9g01817 766 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Trre9g01817 766 Gene3D - 299 463 IPR023393 -
Trre9g01817 766 SMART START_1 253 478 IPR002913 GO:0008289
Trre9g01817 766 Pfam Homeodomain 53 108 IPR001356 GO:0003677
Trre9g01817 766 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 49 743 IPR042160 -
Trre9g01817 766 SUPERFAMILY Bet v1-like 505 740 - -
Trre9g01817 766 CDD homeodomain 53 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01817 Trre-Chr9 17148810 17154596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01817 32 746 Homeobox Transcription Factor Family AT5G46880 59.146 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre9g01817 START 3e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01817 - - psat:127119778 1416.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01817 9 17148810 17154596 Trre9g01817 9 17148810 17154596 ECH