Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01816 ATGTATGGTGATTGTCAAGTTATGTCAACAATGGGAGGAGGAAATGTAGTAGTAAACTCAGAATCACTTTTTTCTTCTCCGATCCATAACCCTAACTTTAACTTCATGTCAACCATGCCTTTTCAACCCTTTCCTTCTTCCATGAAAGAAGAAGATGGAATGCTGAGAGGGAAAGAAGAGATAATGGATCAAAGTGGCTCGGGTAGCGAACAAGTTGAAGATAAGTCGGGGAATGAACAAGAAATTAATAATGAACAAGAAACTACGAAGAAAAAACGTTATCATCGACACACTGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCTCACCCAGATGATAAACAAAGAATGAAACTAAGCCATGATTTGGGATTAAAACCACGGCAAGTCAAATTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAAAATGAGAATTTAAAGAATGAGAACTATCGGCTACAAGCAGCGTTACGAAATATTATGTGTCCAAATTGTGGTGGGCCATGTATAATGGGCCCTGATATGGGCTTGGATGATCATCAACTTCGACTTGAAAATGCCCGGTTAAGAGAAGAGCTAGATCGTGTGTGTTGTATAACATCAAGATACACCGGTCGCCAAATTCAAACAATGGCACCACCATCTCTAATGCAACCATCATTGGACTTAGACATGAACATATACCCAACAAGACACTTTTCTGATCAAATCACACAATGCACAGAAATGATTCCTGTCCCTATGTTACCACTTGAACCTTCACATTTTCAAGATGGTGGTCTCTTATTATTAGAAGATGAGAAATCACTTGCAATGGAACTTGCAGCTTCTTCTATGACTGAACTTGTTAAGATGTGTCAAATGAACGAACCGCTTTGGATTCGAAACGGTGAAAATGATAGGGAAGTTCTTAATTTTGATGAGCATGCTAGACTTTTTTCATGGCCTTTGAATCTTAAGCAGAGAAGTGAGTTAAGGACAGAAGCTACACGTGATTCTGCTGTTGTTATTATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGTTGGAATTATTTCCAACAATTGTTGCTAGAGCAAGAACTGTTCAAATTATAGCTTCTGGTGCTTCTGGTCATGCAAGTGGAACTCTTCAGCTGATGCATGCAGAATTCCAAGTTCTTTCTCCATTGGTATCGACTAGAGAGACTCATTTTCTTCGGTATTGTCAGCAAAATGCAGAGGAAGGAACATGGGCCATTGTAGATTTTCCTGTTGAATCCTTCCACCAAAATTTTCACAATTCTTATCCCAAATACTGCAGAAGATCTTCTGGCTGTGTCATTCAAGATATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAACATGCAAAAGTTGTAGAGAAACCTGTTCATCAAATATTGAGCAACTATGTGTATAGTGGAATGGCATTTGGCGCGCAACGTTGGTTAGGAGTTTTGCAAAGACAATGTGAAAGGGTTGCTAGCCTCATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCCGGAAGCGCGAAAGAACTTGATGAAACTAGCTAACAGGATGATAAAAACTTTTAGTCTTAATATGACAACTTATGGTGGCCAATCATGGACTGCTATATCAGATTCACCAGAAGACACTGTTAGAATCACAACTAGAAAAATCACTGAACCTGGCCAACCTAATGGTGTGATTCTCGCTGCGGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAAGTTTTTGATCTCCTCCGCGATGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTTGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTTGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTACAAGAAACTTGCACAGATCAATCTGGAAGCTTAGTAGTCTACACGACAATCGATGTTGATTCGATCCAGCTAGCCATGAGTGGGGAAGACCCTTCATGCATTTCACTTCTTCCACAAGGATTCATGATAGTACCAATGGACTCATCAAACACTGAGACATCATCTGAACAAGGTGTGACAGGAACACCATCATCAACAACTAGTGCTGCTTCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCATCTCTGCAATACCTTGCATCAAATTGAAGGTGCTCTTTGTAGCACCACTAACAACAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACAAGTGCACCTTCCAAGTAG 2415 0.4008 MYGDCQVMSTMGGGNVVVNSESLFSSPIHNPNFNFMSTMPFQPFPSSMKEEDGMLRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQETTKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENENLKNENYRLQAALRNIMCPNCGGPCIMGPDMGLDDHQLRLENARLREELDRVCCITSRYTGRQIQTMAPPSLMQPSLDLDMNIYPTRHFSDQITQCTEMIPVPMLPLEPSHFQDGGLLLLEDEKSLAMELAASSMTELVKMCQMNEPLWIRNGENDREVLNFDEHARLFSWPLNLKQRSELRTEATRDSAVVIMNSVTLVDAFLDAQKWLELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVESFHQNFHNSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQILSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTYGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQETCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCISLLPQGFMIVPMDSSNTETSSEQGVTGTPSSTTSAASANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALCSTTNNNCFVGSCNEPTTSAPSK 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01816 804 MobiDBLite consensus disorder prediction 711 731 - -
Trre9g01816 804 SMART HOX_1 89 152 IPR001356 GO:0003677
Trre9g01816 804 SUPERFAMILY Bet v1-like 543 778 - -
Trre9g01816 804 SUPERFAMILY Bet v1-like 284 518 - -
Trre9g01816 804 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 87 781 IPR042160 -
Trre9g01816 804 Pfam START domain 292 516 IPR002913 GO:0008289
Trre9g01816 804 CDD homeodomain 91 149 IPR001356 GO:0003677
Trre9g01816 804 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Trre9g01816 804 MobiDBLite consensus disorder prediction 61 94 - -
Trre9g01816 804 CDD START_ArGLABRA2_like 286 515 - -
Trre9g01816 804 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Trre9g01816 804 Gene3D - 337 501 IPR023393 -
Trre9g01816 804 ProSiteProfiles START domain profile. 282 519 IPR002913 GO:0008289
Trre9g01816 804 MobiDBLite consensus disorder prediction 74 92 - -
Trre9g01816 804 Coils Coil 147 177 - -
Trre9g01816 804 SUPERFAMILY Homeodomain-like 80 149 IPR009057 -
Trre9g01816 804 SMART START_1 291 516 IPR002913 GO:0008289
Trre9g01816 804 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Trre9g01816 804 Gene3D - 75 159 - -
Trre9g01816 804 FunFam Homeobox-leucine zipper protein HDG1 76 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01816 Trre-Chr9 17148696 17154596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01816 8 784 Homeobox Transcription Factor Family AT5G46880 56.100 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre9g01816 START 3.3e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01816 - - psat:127119778 1488.4