Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g01812 | ATGGAAAACTACAGGGATGTTATTCATTCAACTGACAGCGATTCATTGGATGCATCTAGTGGTGAACACAGTGATGATGCTGGATATAGTGATGATGAAGATTGTAACTATGATGTATCCGATGAAGACCAAAGTTCAAATGATGAAGATGTTGCTGATAATTACGATGGCTCTGAAGCAATTGAATCGAAAGAGCCAAATCAGGAAGTACTTGTGGGTGAACATATGGTAAGGATTAATTCCCTTACTGCTGAGGAAATTCGTGGTTTGGAATTTGGAAATTGCGATGAAGCATATGAATTTTACTATCAATACGCTAAATGTAAAGGATTTGCTATCAGGAGAAGCGATATGAAAAGAAAGCCCAAAGGTACTGGAATGATAGTAATGAATCTGTTTGTCTGCAACAAACGTGGATTAAGAGAAGAGAAGCACTTAAATAGGGTAGATAGGCAAAGACGTGACCAACGTCTGAGCCGTACCAACTGCACTGCTAGGATCCGTGTGCACTCTGGCTTTATGATTATAATTTATGGAACCAAGTCAAGTATCGGACTTCATGGATGGGGAGTTCGTGAGTACCCAAGGCGCGTCTATGACGCCGTGTTGTTTAGTAATGAGTTGGAAATTCTCACCTTGCGTTGGAAAGAATTAAATAGGGAACAATTCAAATTTATCGAGCCCCGATTAACTTATGGGACTATTGGTGGGAGATTTAAGAAAGGAGAAAACCCGTTTATTGAAGAGGCATATCAACGTGTAGCGTTAGATCAGCTTCTTAAGATTGCTGGTATTACAGATGACGACTTATTGATTATGTCTGATGTTGATGAGATACCGAGTGCTCACACTATTAACCTCTTGAGATGGTGCGACAAAATACCTCCAATCTTGCATCTACAGCTAAAGAATTATCTATATTCATTCGAGTTTCATCTGGATAACAAGAGCTGGAGAGCAGCAATTCACAGGTATCAGTCCGACAAGACAAGATATGCACATTATCGCCAGTCCGATAACATATTGGCAGATTCGGGTTGGCATTGTAGCTTTTGTTTCCGACGAATCAGTGATTTTATTTTTAAGATGAAAGCTTACAGTCATTACGATAGAGTTAGGTTCTCTCACTTTTTAAATCCTGATAGAATTCAGAAAGTAATATGTGAAGGGGCTGATCTATTTGATATGCTCCCTGAGGAGTATACTTTTAGGGAGATCATTGGTAAAATGGGTCCAATACCTCGTTCATATTCTGCAGTTCACCTTCCTGCTTTCCTTTTAGAAAATGCAGAAAAGTATAAATTTCTCTTGCCTGGAAATTGCATGAGAGAGAGATGA | 1338 | 0.3924 | MENYRDVIHSTDSDSLDASSGEHSDDAGYSDDEDCNYDVSDEDQSSNDEDVADNYDGSEAIESKEPNQEVLVGEHMVRINSLTAEEIRGLEFGNCDEAYEFYYQYAKCKGFAIRRSDMKRKPKGTGMIVMNLFVCNKRGLREEKHLNRVDRQRRDQRLSRTNCTARIRVHSGFMIIIYGTKSSIGLHGWGVREYPRRVYDAVLFSNELEILTLRWKELNREQFKFIEPRLTYGTIGGRFKKGENPFIEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRWCDKIPPILHLQLKNYLYSFEFHLDNKSWRAAIHRYQSDKTRYAHYRQSDNILADSGWHCSFCFRRISDFIFKMKAYSHYDRVRFSHFLNPDRIQKVICEGADLFDMLPEEYTFREIIGKMGPIPRSYSAVHLPAFLLENAEKYKFLLPGNCMRER | 445 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g01812 | 445 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Trre9g01812 | 445 | PANTHER | BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE | 185 | 219 | IPR006813 | GO:0003830|GO:0006487|GO:0016020 | |
Trre9g01812 | 445 | MobiDBLite | consensus disorder prediction | 27 | 56 | - | - | |
Trre9g01812 | 445 | Pfam | FAR1 DNA-binding domain | 100 | 170 | IPR004330 | - | |
Trre9g01812 | 445 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Trre9g01812 | 445 | Pfam | Glycosyltransferase family 17 | 183 | 219 | IPR006813 | GO:0003830|GO:0006487|GO:0016020 | |
Trre9g01812 | 445 | Pfam | Glycosyltransferase family 17 | 219 | 444 | IPR006813 | GO:0003830|GO:0006487|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g01812 | Trre-Chr9 | 17075011 | 17081727 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g01812 | 186 | 444 | Glycosyltransferase | AT1G12990 | 75.874 | 1.67e-161 | 459 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | FAR1 | Trre9g01812 | Glyco_transf_17 | 1e-120 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g01812 | K00737 | - | gmx:100787062 | 496.123 |