Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01794 ATGGATAAAACCGCAAAAGAGAAGGAGTCGAAGACGCCGCCACCAACATCACAGGAGCAGCCTTCGACCACTACAAGCACCGGAGCAATTAATAATGACTGGGCCAGCTTTCAGGCATATTCTCCTATGCCTCCACATGGATTCATGGCGTCAAGTCCCCAAGCTCACCCTTATATGTGGGGTGTCCAGCACATTATGCCTCCTTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCCCATCCATCCATGCCTCCGGGATCTTATCCATACAATCCTTATGCCATGCCTACTCCAAACGGTGTTGCTGAGGCTTCTGGAAACACTCCTGCCAGCATGGAAACTGATAGTAAGCCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTAAACATGATTACAGGGAAAAATAATGAACATGGTAAAACAGCGGGGGCATCTGCTAATGGAATTCACTCAAAGAGTGGTGGTGAAAGTGGAAGTTTTGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAGAATGACTCTCAATTGAAATCCGGGGACAGGCGGGATTCTTATGAAGGTGAACCGTCTCAAAATGGCAGTTCAGCACATACTTCACAAAATGGAGGACTTAATGCACCTCATACAGTAGTTAATCAAAGTATGTCTGTCCTTCCTATCTCTGCGAGTGGTGCTCCTGGAGTTGTTGCTGGTCCTGCAACAAACTTAAATATAGGAATGGATTATTGGGGCACGCCGACTTCATCCAACATTCCTGCTATCCGTGGAAAGGTGCCATCTACTACAGTTGCGGGAGGGGTGGTAACAGGTGGATCACGGGATAGTGTCCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGGCGAAAACAGTCTAATAGGGAATCTGCTCGGAGATCCAGGCTGCGCAAGCAGGCTGAGTGCGATGAGCTAGCTCAGCGTGCTGATGTTTTGAAAGAAGAAAATGCTTCACTCCGATTAGAAGTAAGTCGCATTAGAAGCGAGTATGAGCAGCTACTCTCCGAGAATGCAGCCCTCAAGGAGAGACTCGGGGAACAACCTGGGAGTGATCAACACGTGCGTAACGACACTCAACAGAGTGGTAAAACAGAGGATGTGCAGGGTGGTCATTAG 1200 0.4717 MDKTAKEKESKTPPPTSQEQPSTTTSTGAINNDWASFQAYSPMPPHGFMASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSMPPGSYPYNPYAMPTPNGVAEASGNTPASMETDSKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTAGASANGIHSKSGGESGSFEGTSEGSDANSQNDSQLKSGDRRDSYEGEPSQNGSSAHTSQNGGLNAPHTVVNQSMSVLPISASGAPGVVAGPATNLNIGMDYWGTPTSSNIPAIRGKVPSTTVAGGVVTGGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRLEVSRIRSEYEQLLSENAALKERLGEQPGSDQHVRNDTQQSGKTEDVQGGH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01794 399 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 305 368 IPR004827 GO:0003700|GO:0006355
Trre9g01794 399 MobiDBLite consensus disorder prediction 142 193 - -
Trre9g01794 399 MobiDBLite consensus disorder prediction 14 38 - -
Trre9g01794 399 SUPERFAMILY Leucine zipper domain 306 362 IPR046347 GO:0003700|GO:0006355
Trre9g01794 399 Coils Coil 323 371 - -
Trre9g01794 399 MobiDBLite consensus disorder prediction 305 327 - -
Trre9g01794 399 Pfam Disordered region downstream of MFMR 131 270 - -
Trre9g01794 399 Pfam G-box binding protein MFMR 3 92 IPR012900 -
Trre9g01794 399 MobiDBLite consensus disorder prediction 379 399 - -
Trre9g01794 399 CDD bZIP_plant_GBF1 308 358 IPR045314 GO:0003700|GO:0006355
Trre9g01794 399 MobiDBLite consensus disorder prediction 367 399 - -
Trre9g01794 399 MobiDBLite consensus disorder prediction 1 38 - -
Trre9g01794 399 PANTHER G-BOX-BINDING FACTOR 3-RELATED 10 387 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre9g01794 399 Gene3D - 306 375 - -
Trre9g01794 399 MobiDBLite consensus disorder prediction 206 226 - -
Trre9g01794 399 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 310 325 IPR004827 GO:0003700|GO:0006355
Trre9g01794 399 MobiDBLite consensus disorder prediction 110 226 - -
Trre9g01794 399 Pfam bZIP transcription factor 303 365 IPR004827 GO:0003700|GO:0006355
Trre9g01794 399 SMART brlzneu 303 367 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01794 Trre-Chr9 16821859 16826938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01794 1 393 bZIP Transcription Factor Family AT2G35530 62.069 3.35e-162 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre9g01794 MFMR_assoc 3.6e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01794 K09060 - gmx:778122 650.203