Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01716 ATGGGTAAGAAGAACGGCGCCGTTGTTGCCACCGAACCAGTCGCCGAAGAACAAACCAATAACAACAACAACAACAACACAGAACTCAAATATTCGAAGAAGAACAAAAAGAACAAAAACAAACACAATCTTCAAACCGAAGAAAACACTCCCAAAAGAAAGCACGAAGAACTCAACAATCAAAACGACACCGAATCGGAGAAGAAAACTAAGAAGAAGAAAAAGCACAACAAATCGGATGAAAATGACACAGGTAACGGTGTTGAGACGGTTTCTGCATCGGATGAACCGATTACGGTTACCGGAAAGAATGCCAAAGATGAGAAATATGCGGCAGTTAAAACTTTTGTTGGTTCTGGACTTCCTGATAATGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCTTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCAGCTACTGGTTCAGGAAAGACACTTGCTTTTGGACTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAGTAAGGTTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACAAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAGTCTTGTGGCGTGGAGTCAATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCTGCACTTAAATCTGGCGTTGATATTGTCATTGGAACCCCGGGTCGTATTCAAGATCTAGTTGAAATGGGTATCTGTCGTCTACAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTCATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTTAAAGTTGTTGTAGGGTCAGAGGATTTATCTGCCAATCATGATGTCATGCAGATAGTTGAGGTACTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGAGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAAGCGGTGTCAATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAAGCAAATAAGGGACTTTCTGGGGAGCTTGTGAATGTTTTAAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGATGATGAAGACTAA 1605 0.4156 MGKKNGAVVATEPVAEEQTNNNNNNNTELKYSKKNKKNKNKHNLQTEENTPKRKHEELNNQNDTESEKKTKKKKKHNKSDENDTGNGVETVSASDEPITVTGKNAKDEKYAAVKTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKSKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESICLYGGTSKGPQISALKSGVDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTQANKGLSGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01716 534 Gene3D - 62 324 IPR027417 -
Trre9g01716 534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 497 IPR001650 -
Trre9g01716 534 CDD DEADc 130 322 - -
Trre9g01716 534 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Trre9g01716 534 Gene3D - 325 500 IPR027417 -
Trre9g01716 534 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 68 493 - -
Trre9g01716 534 SMART ultradead3 131 338 IPR014001 -
Trre9g01716 534 MobiDBLite consensus disorder prediction 84 99 - -
Trre9g01716 534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 321 IPR014001 -
Trre9g01716 534 FunFam ATP-dependent RNA helicase RhlB 324 501 - -
Trre9g01716 534 Pfam Helicase conserved C-terminal domain 350 458 IPR001650 -
Trre9g01716 534 MobiDBLite consensus disorder prediction 41 83 - -
Trre9g01716 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 470 IPR027417 -
Trre9g01716 534 MobiDBLite consensus disorder prediction 1 100 - -
Trre9g01716 534 Pfam DEAD/DEAH box helicase 137 306 IPR011545 GO:0003676|GO:0005524
Trre9g01716 534 Coils Coil 55 75 - -
Trre9g01716 534 SMART helicmild6 377 458 IPR001650 -
Trre9g01716 534 CDD SF2_C_DEAD 335 467 - -
Trre9g01716 534 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01716 Trre-Chr9 15345157 15350853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01716 113 466 Eukaryotic Initiation Factors Gene Family AT3G19760 33.427 4.50e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01716 K14811 - gmx:100806057 813.913