LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g01712	ATGGCAGATAGTTCAGTATCATTTTTATTGGACAAACTATCTTGGTTACTTCAAGAAGAAGTGAACCTACAAAAAGGGGTCCGTGAAGATGTTCAATACATCAAAGACGAACTCGTACGCCACAAAGCCATCTTAATGAAAGCTGATTCATTGGAAGACAAAGATCCTGAACTAAAAGTATGGGTTAAAAGTGTAAGAAATATTGCTGAAGACATTGAAGATGCTATAGATGAATACAATCTTCGTCTTGTTGATCATCATCAACAAAGTAAGAACCATTCTCCTATTCATAAGCTTGGTTTTGTGATCAAGACTATGAAAGCTAGACACAGAATAGCTAAAGATATACAAGGAATCAAATCAAAAGTTGAAACTATCTCTAATGGACGTCCAAACATATCTGGTGTAGGTTCAAGCTCAAGTCAAAGGCGTTCATCAAGGCTTGATAGTCAAGGCGATGCCCTTTTGCTAGAGGAAGCTGATTTAGTTGGAATTGAAGAACCAAAGAAGCAACTTTGTGATTTGCTGTTCAAAGATGAAACAAAGAGAGCTGTGATTTCAATCTATGGTATGGGAGGTTTAGGGAAGACAACATTGGCAAAACAAGTCTATGAAGATCCAAAAGTAAAGAAACATTTCAGGATTCATGCTTGGGTTAATCTCTCTCAATCATTCAGAATGGAAGAGGTACTGAAAGACCTTGTACAACAACTCCATAATGTTATTGGAAAACCAGCTCCAGAATCAATTGGAATGATGAAAATTCCCAATTTGAAAGAGTTTATCAAGAATTTTCTTCAGAGAAGTAAGAAATATCTAATTGTGCTTGATGATGTGTGGAGTGTGAATGTATGGGATGCTGTGAACCATGCTTTGCCTAATAACAACTGCGGCAGTAGAGTGATTCTTACGACACGCAAGAAAGATATAGCTTTGTATTCTTGTGCAGAATTGGGTAAGGATTTTCTTTTTCCCCTTGAATTCTTACCAAAGCAAGAAGCTTGGTCACTTTTTTGTAGGAAGACATTTCAAGGCAACTCATGTCCTCCACATCTTGAAGAAGTTTGTAGGAAGATCTTGAAATTGTGTGGAGGGTTGCCATTAGCAATTGTGGCAATCAGTGGTGCTTTGGCTACGAGAGAAAGATCAAACATAGAAGAATGGAACATGGTTTGCAGAAGTTTTGGTTCTGAAATTGAAGGCAATGACATATTGGAAGTTATGAAGAAAGTGCTTTCCTTAAGTTTCAATGAATTGCCTTACTATCTTAAATCATGTTTGATGTATTTAACCGTATTCCCAGAATTTCACGCTATCGAGCATATGAGATTGATTCGATTGTGGATAGCTGAAGGGTTTGTGAAACACGAAGATGGCAAGACACTAGAGGAAGTTGCAGATAGTTATCTTAAGGAGCTTTTGAACAGAAGTTTAATCCAAGTGGTAGAAAAAACAAGTGATGGAAGGATGAATACATGTCGGATGCATGGTCTTACAAGGGAAATTGTTAATTTGAAATCAAGAGATCAGAACTTTGCAACAATAGCCAAAGATAACGACATAGTATGGCCGGAACGAGTTCGTCGATTGTCAGTGATAAATTCATCACAAGATGCATTACAACAAAATCAGACAACATTTCATCTTAGGTCTCTGCTAATGTTTCCATTATCAGATTCACCCAGTCATTTTTCTATTAATGAATTATGCACCTCCAGTGGTGTTAAGTTGCTCAATGTGTTAGACTTGCAAGATGCGCCTTTGGAGGTTTTTCCTGCTGAAATTATCAACCTTTACCTTCTGAAGTATCTAAGTTTAAAGAATACAAATGTTAAAAACATTCCAGGATCGATTAAGAAGCTGCAATACCTGGAGACCTTGGATCTTAAACACACTTATGTCACTGAACTGCCCGCTGAAATTGCGGAGCTGAAACGATTACGCCATCTTCTGGTGTATCGTTACGAGATTGAATCATATGCTAAATTCGGCTCAAGGCATGGCTTCAAGATGACTGCGCCTATCGGAAACATGCTATCTTTGCAAAAGCTTTGTTTCATAGAGGTAGACCAAGGAAGTGGAGCCTTGATGGTTGAGTTAGCAAAACTTACTCAACTTAGGAGGCTAGGCATTAGAAACATGAAGAAAGAAGATGGTGCTGCTTTGTGTTCATCAATTGAGAAGATGGTCAATCTTACATCACTATCCATAACCGCAATAAACGAAGATGAGATAATTGATATTCACAGCATTTCAAAGCCTCCTCAGTATCTTCAGAAGTTATACTTGAGCGGACGTTTAGAGAAGTTTCCACAATGGATAAAATCTTGCAAGAATTTAGTCAGAGTTTTCTTAAAATGGAGCAGGCTAAAGGAGGATCCTCTGGTGTATCTTCAAGATTTGCCAAATCTTCGACATCTTGAGTTTCTTCAAGCTTATGTTGGTGAGACATTGAAATTCAATGCAAAAGGGTTTCCAAGTCTGAAGGTGTTAGGCCTTGATGATTTAGAAGGATTGAAATATATGGAAATTGAGGATGAAGCAATGCAAGGTCTTAAAAAGTTGGTCATTCAGCAATGTGGCTCATTCAAGAATGTACCATTAGGCATTGAATACTTAACTAAGCTAAAAGCAATTGAGTTATTTGATATGCCTAAAGAATTGATTATGGCACTGCGTCCAAATGGAGGCGAAGATTATTGGAGAGTACAGAATGTTCCAACAATTTATTCTACTTATTGGAGGGATTGTGGCTGGGATGTTTACCCAATAGAGACTTTTGGGGAGATAGAGAGTGACACCGATCATAGTAGTGCATTGAGGACTCTTCAGCTTCCTACTCTTTGGAAGGTTTAA	2856	0.3785	MADSSVSFLLDKLSWLLQEEVNLQKGVREDVQYIKDELVRHKAILMKADSLEDKDPELKVWVKSVRNIAEDIEDAIDEYNLRLVDHHQQSKNHSPIHKLGFVIKTMKARHRIAKDIQGIKSKVETISNGRPNISGVGSSSSQRRSSRLDSQGDALLLEEADLVGIEEPKKQLCDLLFKDETKRAVISIYGMGGLGKTTLAKQVYEDPKVKKHFRIHAWVNLSQSFRMEEVLKDLVQQLHNVIGKPAPESIGMMKIPNLKEFIKNFLQRSKKYLIVLDDVWSVNVWDAVNHALPNNNCGSRVILTTRKKDIALYSCAELGKDFLFPLEFLPKQEAWSLFCRKTFQGNSCPPHLEEVCRKILKLCGGLPLAIVAISGALATRERSNIEEWNMVCRSFGSEIEGNDILEVMKKVLSLSFNELPYYLKSCLMYLTVFPEFHAIEHMRLIRLWIAEGFVKHEDGKTLEEVADSYLKELLNRSLIQVVEKTSDGRMNTCRMHGLTREIVNLKSRDQNFATIAKDNDIVWPERVRRLSVINSSQDALQQNQTTFHLRSLLMFPLSDSPSHFSINELCTSSGVKLLNVLDLQDAPLEVFPAEIINLYLLKYLSLKNTNVKNIPGSIKKLQYLETLDLKHTYVTELPAEIAELKRLRHLLVYRYEIESYAKFGSRHGFKMTAPIGNMLSLQKLCFIEVDQGSGALMVELAKLTQLRRLGIRNMKKEDGAALCSSIEKMVNLTSLSITAINEDEIIDIHSISKPPQYLQKLYLSGRLEKFPQWIKSCKNLVRVFLKWSRLKEDPLVYLQDLPNLRHLEFLQAYVGETLKFNAKGFPSLKVLGLDDLEGLKYMEIEDEAMQGLKKLVIQQCGSFKNVPLGIEYLTKLKAIELFDMPKELIMALRPNGGEDYWRVQNVPTIYSTYWRDCGWDVYPIETFGEIESDTDHSSALRTLQLPTLWKV	951

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g01712	951	FunFam	Probable disease resistance protein At1g63360	416	504	-	-
	Trre9g01712	951	PRINTS	Disease resistance protein signature	185	200	-	-
	Trre9g01712	951	PRINTS	Disease resistance protein signature	266	280	-	-
	Trre9g01712	951	PRINTS	Disease resistance protein signature	363	377	-	-
	Trre9g01712	951	PRINTS	Disease resistance protein signature	619	635	-	-
	Trre9g01712	951	Pfam	NB-ARC domain	166	417	IPR002182	GO:0043531
	Trre9g01712	951	CDD	RX-CC_like	2	128	IPR038005	-
	Trre9g01712	951	MobiDBLite	consensus disorder prediction	126	147	-	-
	Trre9g01712	951	Pfam	Rx N-terminal domain	6	93	IPR041118	-
	Trre9g01712	951	Gene3D	-	5	113	-	-
	Trre9g01712	951	Gene3D	-	416	502	IPR036388	-
	Trre9g01712	951	Gene3D	-	151	316	IPR027417	-
	Trre9g01712	951	Coils	Coil	62	89	-	-
	Trre9g01712	951	Gene3D	Ribonuclease Inhibitor	503	892	IPR032675	-
	Trre9g01712	951	PANTHER	DISEASE RESISTANCE PROTEIN RP	45	863	IPR044974	GO:0006952
	Trre9g01712	951	Gene3D	-	329	415	IPR042197	-
	Trre9g01712	951	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	430	IPR027417	-
	Trre9g01712	951	FunFam	Probable disease resistance protein At1g61300	151	317	-	-
	Trre9g01712	951	SUPERFAMILY	L domain-like	511	890	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g01712	Trre-Chr9	15303238	15307153	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g01712	186	776	WRKY Transcription Factor Family	AT5G45050	20.975	3.66e-09	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g01712	K13457		-	gmx:100305458	1404.04