Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01709 ATGATTGAGTCGGATAATGGGATCGTGATTGTAAACTCTAATGAAAGAGTTAGAATAATTGAGCTCAAGTCAATACCCGAAGAAACTCAGGCCGCGGCAAATAGAATAATTGAACTCGAGTCAATACCCGAAGAAACTCAGGCCGCGGCAAATAGAGCGCATAGAAAAAGGAAACATTGGAAAGAAGATGAACATAGGCAATTTTTGAAAGGGCTGAAAAAATATCAAAGGGGACAATGGAAAGAGATTTCAGAAGAATTTGTGACAACAAGAACTCCAAGTCAAATTGCTAGCCATGCTCAAAAGTATTACGAGCGCCAAGATACGGCGCAAAAAGAGCAAAAGAAGAGAAGAAGTATTCATGACACAACCATCGACAAAAATGGTAGATTAGTCACTCTTCCTATTAAAAAACAAAATGAGATTCCTATTGCACAAGAAATTGATGAAATTCCTTCAATTGAACAACAAAATAATACTTCTTCTTTGGTCACTCAGCCTATTGATGAACAAAATGAGATTCCTTTAAATGATAGCAACAATGGCGACTTGGTCACTCCACCTATTGAGCCATTGCAAGAACATCCACAACTTGAGTGCACAATTCGTACGCGCGATATTTTGCCGCATGATATGAATAATGTCATCAAGATGTTTGAATTGCTGGAAAAAACCTTAAAAAGATGA 687 0.3755 MIESDNGIVIVNSNERVRIIELKSIPEETQAAANRIIELESIPEETQAAANRAHRKRKHWKEDEHRQFLKGLKKYQRGQWKEISEEFVTTRTPSQIASHAQKYYERQDTAQKEQKKRRSIHDTTIDKNGRLVTLPIKKQNEIPIAQEIDEIPSIEQQNNTSSLVTQPIDEQNEIPLNDSNNGDLVTPPIEPLQEHPQLECTIRTRDILPHDMNNVIKMFELLEKTLKR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01709 228 MobiDBLite consensus disorder prediction 91 123 - -
Trre9g01709 228 MobiDBLite consensus disorder prediction 172 192 - -
Trre9g01709 228 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 45 177 IPR043363 -
Trre9g01709 228 Gene3D - 58 110 - -
Trre9g01709 228 SMART sant 56 106 IPR001005 -
Trre9g01709 228 Pfam Myb-like DNA-binding domain 57 103 IPR001005 -
Trre9g01709 228 CDD SANT 60 103 IPR001005 -
Trre9g01709 228 ProSiteProfiles Myb-like domain profile. 52 104 IPR001005 -
Trre9g01709 228 MobiDBLite consensus disorder prediction 105 123 - -
Trre9g01709 228 ProSiteProfiles SANT domain profile. 60 108 IPR017884 -
Trre9g01709 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 108 IPR017930 -
Trre9g01709 228 MobiDBLite consensus disorder prediction 172 186 - -
Trre9g01709 228 NCBIfam myb-like DNA-binding domain, SHAQKYF class 56 107 IPR006447 GO:0003677
Trre9g01709 228 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01709 Trre-Chr9 15277275 15280922 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g01709 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01709 - - tpra:123904276 225.328