Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01708 ATGGATCGATTATCCAAAATTAATTTAAATGAGCGGGCTTCAATTCAAACCCCCTCTGAGAATAGCATTGAACAACCACGACAAAATCTCGACACTGATATGATTGAGTCGGATAATGGGATCGTGATTGTAAACTCTAATGAAAGAGTTAGAATAATTGAGCTCAAGTCAATACCCGAAGAAACTCAGGCCGCGGCAAATAGAATAATTGAACTCGAGTCAATACCCGAAGAAACTCAGGCCGCGGCAAATAGAGCGCATAGAAAAAGGAAACATTGGAAAGAAGATGAACATAGGCAATTTTTGAAAGGGCTGAAAAAATATCAAAGGGGACAATGGAAAGAGATTTCAGAAGAATTTGTGACAACAAGAACTCCAAGTCAAATTGCTAGCCATGCTCAAAAGTATTACGAGCGCCAAGATACGGCGCAAAAAGAGCAAAAGAAGAGAAGAAGTATTCATGACACAACCATCGACAAAAATGGTAGATTAGTCACTCTTCCTATTAAAAAACAAAATGAGATTCCTATTGCACAAGAAATTGATGAAATTCCTTCAATTGAACAACAAAATAATACTTCTTCTTTGGTCACTCAGCCTATTGATGAACAAAATGAGATTCCTTTAAATGATAGCAACAATGGCGACTTGGTCACTCCACCTATTGAGCCATTGCAAGAACATCCACAACTTGAGTGCACAATTCGTACGCGCGATATTTTGCCGCATGATATGAATAATGTCATCAAGATGTTTGAATTGCTGGAAAAAACCTTAAAAAGATGA 786 0.3766 MDRLSKINLNERASIQTPSENSIEQPRQNLDTDMIESDNGIVIVNSNERVRIIELKSIPEETQAAANRIIELESIPEETQAAANRAHRKRKHWKEDEHRQFLKGLKKYQRGQWKEISEEFVTTRTPSQIASHAQKYYERQDTAQKEQKKRRSIHDTTIDKNGRLVTLPIKKQNEIPIAQEIDEIPSIEQQNNTSSLVTQPIDEQNEIPLNDSNNGDLVTPPIEPLQEHPQLECTIRTRDILPHDMNNVIKMFELLEKTLKR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01708 261 SUPERFAMILY Homeodomain-like 87 141 IPR009057 -
Trre9g01708 261 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Trre9g01708 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 141 IPR017930 -
Trre9g01708 261 MobiDBLite consensus disorder prediction 124 156 - -
Trre9g01708 261 SMART sant 89 139 IPR001005 -
Trre9g01708 261 PANTHER TRANSCRIPTION FACTOR KUA1 55 213 - -
Trre9g01708 261 ProSiteProfiles SANT domain profile. 93 141 IPR017884 -
Trre9g01708 261 MobiDBLite consensus disorder prediction 205 219 - -
Trre9g01708 261 Gene3D - 91 143 - -
Trre9g01708 261 ProSiteProfiles Myb-like domain profile. 85 137 IPR001005 -
Trre9g01708 261 MobiDBLite consensus disorder prediction 1 26 - -
Trre9g01708 261 MobiDBLite consensus disorder prediction 9 26 - -
Trre9g01708 261 MobiDBLite consensus disorder prediction 138 156 - -
Trre9g01708 261 CDD SANT 93 136 IPR001005 -
Trre9g01708 261 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Trre9g01708 261 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01708 Trre-Chr9 15277176 15280922 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g01708 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01708 - - tpra:123904276 262.307