Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01707 ATGGCAGCTTGTACTGTCTACTCAACACAATCTCTAAGAACAAACATCACAATTCCAACATCATCATCAAAAACACATGTTGGATTTAATCAAAAACAAGTAGTGTTCTACACAAAAAGCAACAACAAAAGAATTAACAGCAACAGCAGATATTTGATAACATGTAAAGCAAGTGATTCACAAACAATTGTGATTGGTTTAGCAGCTGATTCTGGTTGTGGAAAAAGCACTTTTATGAGAAGACTCACAAGTGTTTTTGGTGGAGCAGCAGAACCACCAAAAGGTGGTAATCCTGATTCAAACACACTTATAAGTGACACAACAACTGTTATTTGTTTGGATGATTATCATTCTTTGGATAGAACTGGTAGAAAAGAAAAAGGTGTTACTGCACTTGATCCAAGAGCTAATGATTTTGATCTTATGTATGAACAAGTTAAAGCTATTAAAGATGGAATTTCTGTTCAAAAACCAATTTATAATCATGTTACTGGTCTTTTGGATCCTCCTGAGCTTATTAAACCTCCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTATGATTCTAGAGTCAGGGACCTCTTGGATTTCAGTATCTACTTAGACATTAGTAATGAGGTGAAATTTGCATGGAAAATTCAGAGAGACATGGCAGAACGTGGACACAGTCTTGAAAGTATCAAGGCTAGTATTGAAGCAAGGAAGCCTGATTTTGAAGCTTATATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTACCAACTCAATTGATTCCTGATGATAATGAGGGAAAGATTTTAAGAGTGAGGTTGATCCAAAAAGAGGGTGTTAAGTACTTTAGCCCAGTTTACTTGTTTGATGAAGGTTCAACCATTTCATGGATACCATGTGGAAGGAAACTTACATGCTCTTACCCTGGCATTAAATTTTTCTATGGACCAGAGTCTTACAAAGGAAATGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGATTAGATGAACTAATATATGTTGAGAGTCACTTAAGCAACTTATCTTCCAAATTCTATGGAGAAGTAACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATTTATTTGAGCAGATAGTAGCAAGCAGGGCTGAGTCTCCAGTAGGAGCAACAAAAGCTTAA 1227 0.3659 MAACTVYSTQSLRTNITIPTSSSKTHVGFNQKQVVFYTKSNNKRINSNSRYLITCKASDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGISVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPESYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAESPVGATKA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01707 408 CDD PRK 64 352 - -
Trre9g01707 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Trre9g01707 408 FunFam Phosphoribulokinase 59 289 - -
Trre9g01707 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Trre9g01707 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Trre9g01707 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Trre9g01707 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Trre9g01707 408 PANTHER URIDINE KINASE 49 304 - -
Trre9g01707 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 332 IPR027417 -
Trre9g01707 408 Gene3D - 59 293 IPR027417 -
Trre9g01707 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01707 Trre-Chr9 15163836 15166771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01707 116 290 PRT Gene Family AT3G27440 25.843 2.80e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01707 K00855 - gmx:100807126 735.717