Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01703 ATGGGTAACTCACATCGCAAACACCGTTTTTCTGTTCCAAACAATACGGTTCCTTATAAATACGGTGGTACTGGTACTTCTCAGCTTCATAATCCACAAAACAACATCATGGTTTCTTTGCCTTATGCCAACGCTGACGTCACTCTCCGTTCCCTCGCTGCTCAGGCTGAAGGCTTTGGCCGCTTCGCTACCGGTGGACTTCATGGTTCTCTTTATCATGTCACATCACTCTTAGACGATGGACCGGGATCATTGCGTGACGCATGTCGCAAAAAAGAGCCTTTGTGGATTGTATTTGAGGTTTCGGGTACAATTCAACTTTCGTCTTACTTGAGTGTGTCATCATACAAGACCATTGATGGAAGGGGCCAAAGGATTAAGCTGACAGGAAAGGGTTTTCGGCTGAAGGAATGTGAACATGTAATCATTTGTAATTTAGAGATCGAAGGAGGCAGAGGACCTGATGTCGATGCTATTCAGATTAAACCTAATTCAAAACATATATGGATAGATCGTTGCACTCTCAGTGATTTTGAAGATGGGCTCATTGATATCACTCGAGGAAGCACTGATATTACAATTTCAAGGTGTCACTTTCATCAGCATGATAAAACAATACTCATTGGATCAGATCCGAAACATGTTGATGATAGATGCATGAAGATCACCATACACCACTGTTTTTTCAATGGTACTCGACAAAGGCATCCTCGTGTTAGGTTCGCAAAAGTACATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTTGAATCCCAGATATTCTCTCAACATAATATCTATGAAGCGGGACAGAAGAAGGTTGCTTTTAAGTATCTTCACGAGAAGGCAGCAGACAAGGAAGCTGAAGCAACTGGACACATAATTTCTGAAGGAGATTTATTTTTAAATGGTGCTCAACCAGGGTTGATGACAGAGAATGTTGGGGTTAAGGTGTTTCATCCGAGTGAACACTATCTCACATGGACAGTGGGACATCCTACAGATGATCTAAAGCAAGTTCTTCATCACTCTACCGGATGGCAATCTATTGCGAGGCCAGCCGATCAAGCCATCTGCGCAGAATAA 1107 0.4255 MGNSHRKHRFSVPNNTVPYKYGGTGTSQLHNPQNNIMVSLPYANADVTLRSLAAQAEGFGRFATGGLHGSLYHVTSLLDDGPGSLRDACRKKEPLWIVFEVSGTIQLSSYLSVSSYKTIDGRGQRIKLTGKGFRLKECEHVIICNLEIEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRGSTDITISRCHFHQHDKTILIGSDPKHVDDRCMKITIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLHEKAADKEAEATGHIISEGDLFLNGAQPGLMTENVGVKVFHPSEHYLTWTVGHPTDDLKQVLHHSTGWQSIARPADQAICAE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01703 368 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Trre9g01703 368 PRINTS Pollen allergen Amb family signature 110 126 IPR018082 -
Trre9g01703 368 PRINTS Pollen allergen Amb family signature 257 276 IPR018082 -
Trre9g01703 368 SMART amb_all 82 280 IPR002022 -
Trre9g01703 368 Gene3D - 42 341 IPR012334 -
Trre9g01703 368 SUPERFAMILY Pectin lyase-like 55 362 IPR011050 -
Trre9g01703 368 Pfam Pectate lyase 110 273 IPR002022 -
Trre9g01703 368 PANTHER PECTATE LYASE 18-RELATED 44 313 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01703 Trre-Chr9 15139096 15141776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01703 77 365 Polysaccharide Lyase AT3G55140 74.048 6.06e-165 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01703 K01728 - gmx:100814368 605.905