Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01702 ATGACACAAAACACAATCACTCATCCTCATTGGTATTCATCAAAAACTGGAATTTACAATAGTATACACTCACCTAGGATTAAGAACCTTCCGACAGACCCTTTTCTCGACGTTGTTTCCTTCATTTTTTCTCACCCTCATGACGGGGTTTTGGCCCTTATTGATCACTCAACTGGGTCTTCTATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCAATGGCTTCTGGTCTTCAAAAAATGGGCGTTTCACAAGGTGATGTTGTTTTACTTGTACTACCAAATTCAATTTACTATCCCATTGTACTATTAGGTGTTATGTATCTAGGTGCTGTTGTTACAACATCGAATCCTCTAAGTAGTGTTGGCGAAATTCGTAAGCAAGTTAATGACTGTGGTGCAAGTTTTGCGTTTACTATACCTGAAAATGTTAAGAAACTAGAGCAATTAGGCATGCCTATTATTGTTGTGCCAGAAAATGAAAAGGATTTGAAGCATGAATCTTTCTCGTGTTTTTTTAACCTGATTTATGGTAACTTCGATTTGTTTCATAAGCCGGTTATTAAACAAGAAGACACTGCTGCTATATTGTACTCTTCTGGTACTACAGGTGCGAGCAAAGGAGTCATGTTAACTCATCGAAATTTTATTGCTATGGTTGAGCTTTATATGTGGTTTCAAGCATCTCAGTATGAATACTCTAGTTCCAAAAAGGTGTATCTAGCTGTTTTGCCGATGTTCCATATGTATGGTTTATCGCATTTTGCTTTGGGATTATTGTCGTTGGGCTCAACAATTGTAGTAATGAGGAAATTTGACATTGATGAGGCTATTAGGGCGATTGGTAAATATAATGTTACACACTTTAATGTTGTTCCGCCGATATTGTCGGCATTGACAACGAAGGCAAAGGGTGTTAAGGGAAATAAGTTGCAGAGTTTAAAACAGGTCATTTCCACTGCAGAACCTTTGAGTTTAGGAACTATCAATGATTTTGTTCAAGCTTTTCCTAATGTTGATATTATACAGAGTTATGGAATGACTGAGTCGGGCGGAATAGTAGCACATGGCTTCAATACTGAAAAGTATCACAAGTATTCTTCACTAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTAGTAGACTGCAATAGTGGTGCATTTTTGCCACCAGGCAGCAGTGGTGAGATTTGGGTGAGAGGACCTTCAATTATGAAAGGATACTTGAATAATGAGGAAGCTACAATGTCAACAATTGATAAAGATGGTTGGCTACATACTGGAGATATTGTTTATTTTGATCAGGATGGATACTTATATTTGTGTGACCGCTTGAAAGACATGATCAAATACAAGGGTTTTCAGATTGCTCCTGGTGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTTGCCGTTACAGGTGCCAAGGATGAAGAAGCTGGGGAGATTCCAGTGGCATTTGTGGTTAAGAAGGCTGGAAGTGTACTTTCTCCGAAGGACGTTATCGATTATGTTGCGAAACAGGTTGCTCCACACAAGAGGGTTCGGAAAGTTATCTTCACCGATAAGATACCAAGATCTACGATGGGGAAGAACCTCCGAAGGCAACTCAAAAATTACTTGACTTCTAAACTCTAA 1650 0.3848 MTQNTITHPHWYSSKTGIYNSIHSPRIKNLPTDPFLDVVSFIFSHPHDGVLALIDHSTGSSISYSKLLPLVKSMASGLQKMGVSQGDVVLLVLPNSIYYPIVLLGVMYLGAVVTTSNPLSSVGEIRKQVNDCGASFAFTIPENVKKLEQLGMPIIVVPENEKDLKHESFSCFFNLIYGNFDLFHKPVIKQEDTAAILYSSGTTGASKGVMLTHRNFIAMVELYMWFQASQYEYSSSKKVYLAVLPMFHMYGLSHFALGLLSLGSTIVVMRKFDIDEAIRAIGKYNVTHFNVVPPILSALTTKAKGVKGNKLQSLKQVISTAEPLSLGTINDFVQAFPNVDIIQSYGMTESGGIVAHGFNTEKYHKYSSLGLLAPNMEAKVVDCNSGAFLPPGSSGEIWVRGPSIMKGYLNNEEATMSTIDKDGWLHTGDIVYFDQDGYLYLCDRLKDMIKYKGFQIAPGDLEAVLILHPEIVDVAVTGAKDEEAGEIPVAFVVKKAGSVLSPKDVIDYVAKQVAPHKRVRKVIFTDKIPRSTMGKNLRRQLKNYLTSKL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01702 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 26 446 - -
Trre9g01702 549 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Trre9g01702 549 CDD 4CL 30 541 - -
Trre9g01702 549 Gene3D - 447 547 IPR045851 -
Trre9g01702 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 543 - -
Trre9g01702 549 Pfam AMP-binding enzyme 50 451 IPR000873 -
Trre9g01702 549 Pfam AMP-binding enzyme C-terminal domain 461 535 IPR025110 -
Trre9g01702 549 Gene3D - 30 446 IPR042099 -
Trre9g01702 549 SUPERFAMILY Acetyl-CoA synthetase-like 47 545 - -
Trre9g01702 549 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01702 Trre-Chr9 15134100 15136877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01702 9 549 Monolignol Biosynthesis Gene Families AT4G19010 58.195 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01702 K01904 - gmx:100804808 794.653