Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01688 ATGTGGCCATCACTGAATCATCCACCGTTCACAGTATCCCAATGGCAAGAGCTAGAACATCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTATCTGTTCCTCCAGACCTTCTTTTACCTATTCGGAAAAGTCTTCAATTGATGTCACACCCATCTCTGGGTTATTATGGAAAAAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACAGATGGAAAAAAATGGAGATGTGCTAAGGATGCTCATCCTGATTCTAAGTACTGTGACCGTCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTCAATCTTCTTCTTCAGTTTCAGTTTCTAGTACTTCACAACAACTTGGTTCTTCTATTGGAACTGTTACTGCTACTGTTTCTGCTTCTGCTACTGTTACTTCTACTTCAACCTTCCATTCTCTTCCTTTGCATACAAATGGTACTCGTGAAGGTTTAGGTTTCACTCTTGGGAACACCATACCCCACATGGACCCTATGCTTCTTCCTCTTCAAGATTCTAAGAAATCTTATAGGTTTGGACTGAACAACGAAGCGGAAGAGCACAACCTCTTACAGAAAGATTTCGGAACTGTGAAGTATCAAGGCTACGACTTCACTTCAGATGACACTTGGTATAATAACATGTCTCAGATTCCATCAAACAATGTTTCAGAATCAAGGACCGGTTCTACCATGGTTAACAACGGAAACTACTTCCAACAGCAGCGAACAACACGAGAACCTGAACAGTTGTTTAACCTCGACGCTGCAAGGTCCAAGGAAATTGTCTTTAACAACCAGTTAGGTAATTTAAAACAGGAATATCAATCTTCACAATCTCTCTTCAGTGACTGGCAATGGAAGAAAGATTTAGCCTCCTCTACAATGGAGTATAGGCCAAGCAAGGATTTTAACACTAATCCAGATATCAATGCAGATTCAAAGCCTACTTTATGA 984 0.4065 MWPSLNHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQLMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVESSSSQSSSSVSVSSTSQQLGSSIGTVTATVSASATVTSTSTFHSLPLHTNGTREGLGFTLGNTIPHMDPMLLPLQDSKKSYRFGLNNEAEEHNLLQKDFGTVKYQGYDFTSDDTWYNNMSQIPSNNVSESRTGSTMVNNGNYFQQQRTTREPEQLFNLDAARSKEIVFNNQLGNLKQEYQSSQSLFSDWQWKKDLASSTMEYRPSKDFNTNPDINADSKPTL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01688 327 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre9g01688 327 ProSiteProfiles WRC domain profile. 62 106 IPR014977 -
Trre9g01688 327 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre9g01688 327 MobiDBLite consensus disorder prediction 307 327 - -
Trre9g01688 327 Pfam WRC 63 105 IPR014977 -
Trre9g01688 327 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre9g01688 327 PANTHER GROWTH-REGULATING FACTOR 5 9 297 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre9g01688 327 MobiDBLite consensus disorder prediction 99 123 - -
Trre9g01688 327 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01688 Trre-Chr9 14967362 14970074 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01688 4 105 GRF Transcription Factor Family AT3G13960 55.263 5.20e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre9g01688 WRC 5.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01688 - - gmx:100809947 417.927