Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01687 ATGAGCGTTCAACCACCGCCACAGCTGATGTGGCCATCACTGAATCATCCACCGTTCACAGTATCCCAATGGCAAGAGCTAGAACATCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTATCTGTTCCTCCAGACCTTCTTTTACCTATTCGGAAAAGTCTTCAATTGATGTCACACCCATCTCTGGGTTATTATGGAAAAAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACAGATGGAAAAAAATGGAGATGTGCTAAGGATGCTCATCCTGATTCTAAGTACTGTGACCGTCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTCAATCTTCTTCTTCAGTTTCAGTTTCTAGTACTTCACAACAACTTGGTTCTTCTATTGGAACTGTTACTGCTACTGTTTCTGCTTCTGCTACTGTTACTTCTACTTCAACCTTCCATTCTCTTCCTTTGCATACAAATGGTACTCGTGAAGGTTTAGGTTTCACTCTTGGGAACACCATACCCCACATGGACCCTATGCTTCTTCCTCTTCAAGATTCTAAGAAATCTTATAGGTTTGGACTGAACAACGAAGCGGAAGAGCACAACCTCTTACAGAAAGATTTCGGAACTGTGAAGTATCAAGGCTACGACTTCACTTCAGATGACACTTGGTATAATAACATGTCTCAGATTCCATCAAACAATGTTTCAGAATCAAGGACCGGTTCTACCATGGTTAACAACGGAAACTACTTCCAACAGCAGCGAACAACACGAGAACCTGAACAGTTGTTTAACCTCGACGCTGCAAGGTCCAAGGAAATTGTCTTTAACAACCAGTTAGGTAATTTAAAACAGGAATATCAATCTTCACAATCTCTCTTCAGTGACTGGCAATGGAAGAAAGATTTAGCCTCCTCTACAATGGAGTATAGGCCAAGCAAGGATTTTAACACTAATCCAGATATCAATGCAGATTCAAAGCCTACTTTATGA 1011 0.4115 MSVQPPPQLMWPSLNHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQLMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVESSSSQSSSSVSVSSTSQQLGSSIGTVTATVSASATVTSTSTFHSLPLHTNGTREGLGFTLGNTIPHMDPMLLPLQDSKKSYRFGLNNEAEEHNLLQKDFGTVKYQGYDFTSDDTWYNNMSQIPSNNVSESRTGSTMVNNGNYFQQQRTTREPEQLFNLDAARSKEIVFNNQLGNLKQEYQSSQSLFSDWQWKKDLASSTMEYRPSKDFNTNPDINADSKPTL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01687 336 MobiDBLite consensus disorder prediction 108 132 - -
Trre9g01687 336 ProSiteProfiles QLQ domain profile. 18 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre9g01687 336 MobiDBLite consensus disorder prediction 113 132 - -
Trre9g01687 336 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Trre9g01687 336 Pfam WRC 72 114 IPR014977 -
Trre9g01687 336 PANTHER GROWTH-REGULATING FACTOR 5 17 306 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre9g01687 336 MobiDBLite consensus disorder prediction 316 336 - -
Trre9g01687 336 Pfam QLQ 18 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre9g01687 336 SMART QLQ_2 17 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01687 Trre-Chr9 14967362 14970101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01687 13 114 GRF Transcription Factor Family AT3G13960 55.263 8.37e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre9g01687 WRC 5.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01687 - - gmx:100809947 421.779