Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01681 ATGTGGTCGTCTGATGGATCTGATGATGAGAGCATAATTATTCCTAATCCTGAGGATTCCTATCAATATGCGGAAACAGTTGGTCCAAGTGAGGAGGAGGATAATGCCAACAACTGTGAGATGCCTAAATTTCGAAATGACCGTGTATTTGGTTGGGAACTTCTCATCACCAGGGCTTATGCAAGCTTGAAAAAACAGCAGGTTTTGCATGTACCAAATAAGTGCTTCAGGCGTGTTCTTAAGGGTAGGGATAGTATTGCAATTAAAACTCAACACAATGGAGACAGTATCAGGTGCACCATGATAACCTATGAAAGAAAGGAAGGCAAGCAGGAAATGTACTTGAGTAAAGGATGGTTCGAGTTTGTTAGTGTTAACAACCTTAAGAGGGGAGATAAGTTGCGGTTCCAACTCTCAAATCCACCCGATGTTATGTTTGTGGAGATTATCCGACGAAAACGGTCACGAAGAAATATATCTAAGTAG 486 0.4136 MWSSDGSDDESIIIPNPEDSYQYAETVGPSEEEDNANNCEMPKFRNDRVFGWELLITRAYASLKKQQVLHVPNKCFRRVLKGRDSIAIKTQHNGDSIRCTMITYERKEGKQEMYLSKGWFEFVSVNNLKRGDKLRFQLSNPPDVMFVEIIRRKRSRRNISK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01681 161 CDD B3_DNA 69 151 IPR003340 GO:0003677
Trre9g01681 161 ProSiteProfiles B3 DNA-binding domain profile. 54 153 IPR003340 GO:0003677
Trre9g01681 161 Pfam B3 DNA binding domain 63 152 IPR003340 GO:0003677
Trre9g01681 161 MobiDBLite consensus disorder prediction 1 36 - -
Trre9g01681 161 Gene3D - 31 154 IPR015300 -
Trre9g01681 161 SUPERFAMILY DNA-binding pseudobarrel domain 63 155 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01681 Trre-Chr9 14884802 14885368 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g01681 B3 3.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01681 - K14326 tpra:123909626 117.857