Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01664 ATGGCTGTGAATCTGACACCAGGTGCGATTAAGACGGTGTGTTTCACTTCGGAGGAATTGCAACCGGTGTTACAAGTTATCGATTTGAAGCTTGTTCAATCATCGCAGAATAGTACTTCTGAAAGGTACCGATTAGTTCTCTCTGATGGTTCGTTTTATCAACAAGGAATGCTCGCTACTCAGATGAATCAATTGGTTAAAGAACAAAAGTTACAGAAAGGTTCTATTGTCAGGCTCACTCAGTACGTTTGTAACGATGTTCAGAATCGCAAGATTATTATTATTGTTGATCTCGAGGTTGTGCTGGATAAATGTGACTTGATTGGGAATCCTGTTTCGGTAAATAATTTGGTAAAAGATTTACCTCCACAATCTGCTGTGAGTCAAGCAGGAAATGTTCAACCAGCTGCTGGTCAATTAGGAAACAATGCTGGAAATTCACAGTATTCAAACAGTAATTCCCATGCAGGTGGCAATAATGTTAGACCAAATGTGGCTGCGCCATCTATAGATCGTTCAAACATGAATCCTTCTGCCAGCAGTGTTTATTCTAACAGTTCTGAACCTGCAAGATACGGTGCATCTAATGCCCCTCCATCTTATGCTAAACCTGAGCCTGGAGTCAGTTTGAATAGATCAGCACCAGTCAATGGGTCTTATGGTGAACAGAATACAAGTTTCCGCAATCCACAATACCAGGCTTCAAAACCGGTGCAAAATTCTTACCCTCGCCCTCAGCAGCCTATGAATCGACAGCCATCTCCAATGTACGCCAACAGAGGGCCTACAGGAAGAAATGATGCTCCTCCAAGGATACTTCCAATATCTGCATTGAATCCATATCAGAATATTTGGACAATTAAAGCCAGAGTAACAGCTAAAGGAGAACTTAGGCGCTATACCAATGCCCGAGGTGAAGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTTATGGTGGAGAAATAAAGGCGACTTGCTTTAATGCTGTGGCGGATCAGCACTATGATGTAATCGAAAAAGGTAAAGTCTATCTTGTTTCTAGGGGAAGTGTGAAGCCAGCTCAGAAGAATTTCAATCACCTTTCTAATGATCAAGAGATAACCCTTGATATGAAATCAGTTATACAGCCATGCCTTGAAGATGATAACTCAATTCCAATGCAGAAATATAATTTCCGTTCCATTGGTGACATTGAAAGTATGGAAAACAACAGCATTGTGGACCTGATTGCTGTGGTTACTTCCATCAGTCCCACAGCTTCAATCATTAGAAAGAATGGCACTGAAACACAGAAGCGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTTTATGGGGAGACTTTTGCAATAGCGAAGGACAAAGGCTGCAAAATATTTGTGACTCTGGGCAATTTCCAATTTTGTCTGTAAAATCTGCAAGAGTAAATGATTTCAATGGGAAGTCTGTTGGGACCATAACCACCAGCCAATTAATTGTAGAACCTGATTTTCCAGAGGCTTTTACACTGAAAGAATGGTTTGATAGGGAAGGGAGGAATGTGCCAAGTCAATCTATTTCCAGAGAATCCAATTTTGCTAAAAGTGAAGTGTGGAAGACTGTACATCAAATTAAGGATGAAAATTTAGGGACTAAAGAGAAGCCTGACTGGATATCTATCTGTGCAAATGTTTCATTCATTAAAAGTGATAATTTTTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGTAACAAAAAGGTTACCAACGATGGAGATGGGAAATGGCGCTGTGACAGATGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACTTACTGCAAATGCAGATACAGGATCACACCGCTTTAACATGGGCTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATTGGTATGCCTGCAAAGGATTTGTATTTTGTGAGATATGAAGAATCAGATGAAGTAAAATTTACAGAAATCTTCAAAAAGGTTCTCTTCAACAAATATGTGTTCAAGTTAAAAGTAAAGGAGGAGACATTTAATGACGAATCACGTGTTAAGTCAACAGTAGTAAAAGCGGAGAAGGTAAACTTTGCATCTGATTCTAGATCTCTTTTGGATTTGATTGATAAACTTATGTCTGAGAAAGAAGAAGGTACCACTATTAACTCTGTGATCAATAAAACTGGACTGGGGAGCCTTGAAACTGGACAAGTTATGCCACCCGTATATAACCCTATAAAGAGCAACACTAATACGGGTAGAGATTATGGGACCCCAGCAAACCAAGCGGGTCAGTATGGAAACCAACATAACAGTTCTTTTACTTCGTCAGGGGCTCCTGGTTCGTACATGTCATGTAGCACCTGTGGAGGCACTGGGCATAGCTCTGCACAATGCCTAAATATTAAAAACCAATCTGGACAGTCTGCTGGAGGAGGGGCATTTGCTAACAGGGTATCTGCTGGATCAGGTGGTGCTTCTGGTGATTGCTATAAATGCCAACAACCTGGTCATTGGGCGAGAGATTGTCCTGGTATCAGTGCAGCACCTTCGGATCAGTATTTGCAGCGCCCAACTGCTGGATCAGGTGGTGGTTCTGGTGATTGCTATAAATGCCAACAACCTGGTCATTGGGCAAGAGATTGTCCTGGTAATGGTGCAGCACCTCAATCTTATGTAAACAGTAATGCAGGGCAAGGAAGATATGGTACTGCTCAAAATCAGCAGTATGGAGGACGATATTGA 2751 0.4126 MAVNLTPGAIKTVCFTSEELQPVLQVIDLKLVQSSQNSTSERYRLVLSDGSFYQQGMLATQMNQLVKEQKLQKGSIVRLTQYVCNDVQNRKIIIIVDLEVVLDKCDLIGNPVSVNNLVKDLPPQSAVSQAGNVQPAAGQLGNNAGNSQYSNSNSHAGGNNVRPNVAAPSIDRSNMNPSASSVYSNSSEPARYGASNAPPSYAKPEPGVSLNRSAPVNGSYGEQNTSFRNPQYQASKPVQNSYPRPQQPMNRQPSPMYANRGPTGRNDAPPRILPISALNPYQNIWTIKARVTAKGELRRYTNARGEGKVFSFDLLDSYGGEIKATCFNAVADQHYDVIEKGKVYLVSRGSVKPAQKNFNHLSNDQEITLDMKSVIQPCLEDDNSIPMQKYNFRSIGDIESMENNSIVDLIAVVTSISPTASIIRKNGTETQKRSLQLKDMSGRSVELTLWGDFCNSEGQRLQNICDSGQFPILSVKSARVNDFNGKSVGTITTSQLIVEPDFPEAFTLKEWFDREGRNVPSQSISRESNFAKSEVWKTVHQIKDENLGTKEKPDWISICANVSFIKSDNFCYTACPIMIGDRQCNKKVTNDGDGKWRCDRCDQSVDACDYRYLLQMQIQDHTALTWATAFQESGEEIIGMPAKDLYFVRYEESDEVKFTEIFKKVLFNKYVFKLKVKEETFNDESRVKSTVVKAEKVNFASDSRSLLDLIDKLMSEKEEGTTINSVINKTGLGSLETGQVMPPVYNPIKSNTNTGRDYGTPANQAGQYGNQHNSSFTSSGAPGSYMSCSTCGGTGHSSAQCLNIKNQSGQSAGGGAFANRVSAGSGGASGDCYKCQQPGHWARDCPGISAAPSDQYLQRPTAGSGGGSGDCYKCQQPGHWARDCPGNGAAPQSYVNSNAGQGRYGTAQNQQYGGRY 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01664 916 MobiDBLite consensus disorder prediction 212 259 - -
Trre9g01664 916 NCBIfam replication factor-a protein 1 (rpa1) 224 712 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g01664 916 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre9g01664 916 SUPERFAMILY Nucleic acid-binding proteins 271 386 IPR012340 -
Trre9g01664 916 MobiDBLite consensus disorder prediction 128 267 - -
Trre9g01664 916 Gene3D - 271 380 IPR012340 -
Trre9g01664 916 MobiDBLite consensus disorder prediction 128 193 - -
Trre9g01664 916 CDD RPA1_DBD_C 539 712 IPR047192 -
Trre9g01664 916 PANTHER REPLICATION FACTOR A 1, RFA1 285 688 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g01664 916 ProSiteProfiles Zinc finger CCHC-type profile. 871 885 IPR001878 GO:0003676|GO:0008270
Trre9g01664 916 SUPERFAMILY Nucleic acid-binding proteins 390 519 IPR012340 -
Trre9g01664 916 SMART c2hcfinal6 870 886 IPR001878 GO:0003676|GO:0008270
Trre9g01664 916 SMART c2hcfinal6 787 803 IPR001878 GO:0003676|GO:0008270
Trre9g01664 916 SMART c2hcfinal6 831 847 IPR001878 GO:0003676|GO:0008270
Trre9g01664 916 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Trre9g01664 916 MobiDBLite consensus disorder prediction 752 779 - -
Trre9g01664 916 FunFam Replication protein A subunit 271 382 - -
Trre9g01664 916 FunFam Replication protein A subunit 523 713 - -
Trre9g01664 916 CDD RPA1_DBD_A 274 377 - -
Trre9g01664 916 Gene3D - 863 894 - -
Trre9g01664 916 Gene3D - 384 522 IPR012340 -
Trre9g01664 916 FunFam Replication protein A subunit 4 115 - -
Trre9g01664 916 SUPERFAMILY Retrovirus zinc finger-like domains 825 887 IPR036875 GO:0003676|GO:0008270
Trre9g01664 916 FunFam Replication protein A subunit 384 522 - -
Trre9g01664 916 Pfam Zinc knuckle 832 846 IPR001878 GO:0003676|GO:0008270
Trre9g01664 916 Pfam Zinc knuckle 871 885 IPR001878 GO:0003676|GO:0008270
Trre9g01664 916 CDD RPA1_DBD_B 406 513 - -
Trre9g01664 916 Gene3D - 3 116 IPR012340 -
Trre9g01664 916 Gene3D - 783 855 - -
Trre9g01664 916 Gene3D - 523 714 IPR012340 -
Trre9g01664 916 CDD RPA1N 8 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre9g01664 916 Pfam Replication factor-A C terminal domain 555 706 IPR013955 -
Trre9g01664 916 SUPERFAMILY Nucleic acid-binding proteins 536 714 IPR012340 -
Trre9g01664 916 ProSiteProfiles Zinc finger CCHC-type profile. 832 846 IPR001878 GO:0003676|GO:0008270
Trre9g01664 916 Pfam Replication protein A OB domain 395 498 IPR031657 -
Trre9g01664 916 MobiDBLite consensus disorder prediction 895 916 - -
Trre9g01664 916 Pfam OB-fold nucleic acid binding domain 285 367 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01664 Trre-Chr9 14555920 14559170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01664 1 815 Core DNA Replication Machinery Family AT5G45400 51.042 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01664 K07466 - gmx:100778597 1207.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01664 9 14555920 14559170 Trre9g01664 9 14555920 14559170 ECH