Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01660 ATGATTGCATCAGAAATTGAGGCTAAGCTCGATGAAGGAAATATTCAAGAGGCAGAATCTTCATTGCGAGAAGGGTTGTCGCTTAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGTGCTCTCCGTGTCTTTGATGGGATCGATCTCCATGTTGCCATACAGCGGTTGCAACACTCCTTTTCTGAAAAATCACCCGCCAAAAAAGGTCGTACTCGCACAGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTTTTTGAAGCCATCTACTTAAAAGCCAAGTCTCAACAAAAACTGGGGAAATTTGTTGATGCTGCTAATGACTGTAAACGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTAATTTTCAAGTGGACAATAAACTGCAAGAGATAATCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGGTGGTTGCTATGATGAGGCAATCTCGGCTTATAGGCGTGCACTTCTTAGTCAATGGAACCTCGACAATGATTGTTGTTCAAGAATTCAGAAATCATTTGTTGTTTTTCTTCTGTACAGTGGTGTGGAGGCAAGTCCGCCTAGTTTAGCAGTTCAGATTGACGGTTCTTATGTTCCTAAAAATAATCTCGAAGAGGCGATTCTGCTTCTAATGATTCTTATAAGAAAGTTTTGTGCTGGTAACATAAAATGGGATCCTTCAATTATGGAACACTTAACTTTTGCACTTTCTGTATGTAGCCAAACTTCGGTTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCATCGTATCGATCGTTGGAATTCTTTAGCCTTATGTCATTGTGCAGCCGGACAAAATGTCAGTGCTTTGAATCTGCTAAGGAAGTGCTTGCACAAACATGAACGACCAGACGACCTTACATTGTTGTTATTAGCTGCCAAGATCTGCAGTGAGGTTCCTTATCTTGCCAGCGAGGGAGTCGTCCATGCACAGAGAGCAATCAGTAATGCACACGGTCCAAATGAACATTTAAAAGGCGTTGCTCTACGGATGCTGGGACTTTGTCTCGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGAGGTCTCGCCTTCAATCCAAAGCTTTGGAGTCATTGGAGGAGGCAACTAGATTGGAGAAAAACAATTCTGATCTGATTTTTGAGTTGGCGGTTCAATATGCCGAACACCGAAATTTGACCGCTGCTTTGCGTTATGCGCGGCATTTCTTCAATGAAACTGGTGGCTCTATAGTGAAAGCTTGGATATTGCTTGCCCTGATTTTGTCTGCACAACAAAGATTTGCGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGAGCAGATTGTGAGATGGGAGCAAGGGCCTCTGCTTAAGCTTAAGGCAAAGCTGAAGATCTCCCAATCAAAAGCCATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGTCTTTCCGAGTTAGTTCGAAGGTTGACGATGATAAAGTTAATGAGTTCGATATTTGGCATGGTCTTGCAAATTTATATGCCAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGCAGTACTCTGCAGCTATTTTGCACACCGAAGGTATTTTGTTTGAAGGACGCGGACAAAACCAAGAAGCTCTCAATACTACTATTAATGCTATACTACTTGAACCAAACCATGTTCCAAGCAAAATCTTAATGAGTGCTTTGATTCAGAAAATGGGTTCAAAGGCTTTGGCTGCTGCAAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCGACCAACCGGATGGCTTGGTATTACTTGGGATTGGTTCACAAGAATGATGGCCGAATGGCTGATGCTGCAGACTGTTTTCAAGCAGCTTCCATGCTGGAAGAATTTGATCCCATCGAAAGTTTCAGCACTGTACTTTGA 2025 0.4272 MIASEIEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLHVAIQRLQHSFSEKSPAKKGRTRTESPSSVSQHAASLVFEAIYLKAKSQQKLGKFVDAANDCKRILDAVEKIFYQGIPNFQVDNKLQEIISHAVELLPELWKQGGCYDEAISAYRRALLSQWNLDNDCCSRIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILIRKFCAGNIKWDPSIMEHLTFALSVCSQTSVLAKQFEDLMPGVYHRIDRWNSLALCHCAAGQNVSALNLLRKCLHKHERPDDLTLLLLAAKICSEVPYLASEGVVHAQRAISNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSRLQSKALESLEEATRLEKNNSDLIFELAVQYAEHRNLTAALRYARHFFNETGGSIVKAWILLALILSAQQRFAEAEVVTDAALEQIVRWEQGPLLKLKAKLKISQSKAMDAIETYRYLLALVQAQKKSFGSFRVSSKVDDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKQYSAAILHTEGILFEGRGQNQEALNTTINAILLEPNHVPSKILMSALIQKMGSKALAAARSMLSDALRIEPTNRMAWYYLGLVHKNDGRMADAADCFQAASMLEEFDPIESFSTVL 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01660 674 Gene3D Tetratricopeptide repeat domain 477 590 IPR011990 GO:0005515
Trre9g01660 674 Gene3D Tetratricopeptide repeat domain 5 181 IPR011990 GO:0005515
Trre9g01660 674 SMART tpr_5 438 471 IPR019734 GO:0005515
Trre9g01660 674 SMART tpr_5 562 595 IPR019734 GO:0005515
Trre9g01660 674 SMART tpr_5 632 665 IPR019734 GO:0005515
Trre9g01660 674 SMART tpr_5 282 315 IPR019734 GO:0005515
Trre9g01660 674 SMART tpr_5 528 561 IPR019734 GO:0005515
Trre9g01660 674 SMART tpr_5 98 131 IPR019734 GO:0005515
Trre9g01660 674 SUPERFAMILY TPR-like 98 424 IPR011990 GO:0005515
Trre9g01660 674 SUPERFAMILY TPR-like 476 659 IPR011990 GO:0005515
Trre9g01660 674 Gene3D Tetratricopeptide repeat domain 267 470 IPR011990 GO:0005515
Trre9g01660 674 Coils Coil 381 401 - -
Trre9g01660 674 PANTHER PROTEIN NPG1 4 671 IPR043376 -
Trre9g01660 674 Gene3D - 591 666 - -
Trre9g01660 674 Pfam Tetratricopeptide repeat 615 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01660 Trre-Chr9 14518159 14522712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01660 1 674 Calmodulin-binding Proteins AT2G43040 70.310 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01660 K21843 - gmx:100814609 1132.47