Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01659 ATGGAGTCCAGTGAGCATGAGAGATTGTCGGTTAGAGAGGTTCATGCAAATGGAAGCCGTATGATTGCATCAGAAATTGAGGCTAAGCTCGATGAAGGAAATATTCAAGAGGCAGAATCTTCATTGCGAGAAGGGTTGTCGCTTAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGTGCTCTCCGTGTCTTTGATGGGATCGATCTCCATGTTGCCATACAGCGGTTGCAACACTCCTTTTCTGAAAAATCACCCGCCAAAAAAGGTCGTACTCGCACAGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTTTTTGAAGCCATCTACTTAAAAGCCAAGTCTCAACAAAAACTGGGGAAATTTGTTGATGCTGCTAATGACTGTAAACGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTAATTTTCAAGTGGACAATAAACTGCAAGAGATAATCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGGTGGTTGCTATGATGAGGCAATCTCGGCTTATAGGCGTGCACTTCTTAGTCAATGGAACCTCGACAATGATTGTTGTTCAAGAATTCAGAAATCATTTGTTGTTTTTCTTCTGTACAGTGGTGTGGAGGCAAGTCCGCCTAGTTTAGCAGTTCAGATTGACGGTTCTTATGTTCCTAAAAATAATCTCGAAGAGGCGATTCTGCTTCTAATGATTCTTATAAGAAAGTTTTGTGCTGGTAACATAAAATGGGATCCTTCAATTATGGAACACTTAACTTTTGCACTTTCTGTATGTAGCCAAACTTCGGTTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCATCGTATCGATCGTTGGAATTCTTTAGCCTTATGTCATTGTGCAGCCGGACAAAATGTCAGTGCTTTGAATCTGCTAAGGAAGTGCTTGCACAAACATGAACGACCAGACGACCTTACATTGTTGTTATTAGCTGCCAAGATCTGCAGTGAGGTTCCTTATCTTGCCAGCGAGGGAGTCGTCCATGCACAGAGAGCAATCAGTAATGCACACGGTCCAAATGAACATTTAAAAGGCGTTGCTCTACGGATGCTGGGACTTTGTCTCGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGAGGTCTCGCCTTCAATCCAAAGCTTTGGAGTCATTGGAGGAGGCAACTAGATTGGAGAAAAACAATTCTGATCTGATTTTTGAGTTGGCGGTTCAATATGCCGAACACCGAAATTTGACCGCTGCTTTGCGTTATGCGCGGCATTTCTTCAATGAAACTGGTGGCTCTATAGTGAAAGCTTGGATATTGCTTGCCCTGATTTTGTCTGCACAACAAAGATTTGCGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGAGCAGATTGTGAGATGGGAGCAAGGGCCTCTGCTTAAGCTTAAGGCAAAGCTGAAGATCTCCCAATCAAAAGCCATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGTCTTTCCGAGTTAGTTCGAAGGTTGACGATGATAAAGTTAATGAGTTCGATATTTGGCATGGTCTTGCAAATTTATATGCCAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGCAGTACTCTGCAGCTATTTTGCACACCGAAGGTATTTTGTTTGAAGGACGCGGACAAAACCAAGAAGCTCTCAATACTACTATTAATGCTATACTACTTGAACCAAACCATGTTCCAAGCAAAATCTTAATGAGTGCTTTGATTCAGAAAATGGGTTCAAAGGCTTTGGCTGCTGCAAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCGACCAACCGGATGGCTTGGTATTACTTGGGATTGGTTCACAAGAATGATGGCCGAATGGCTGATGCTGCAGACTGTTTTCAAGCAGCTTCCATGCTGGAAGAATTTGATCCCATCGAAAGTTTCAGCACTGTACTTTGA 2085 0.4288 MESSEHERLSVREVHANGSRMIASEIEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLHVAIQRLQHSFSEKSPAKKGRTRTESPSSVSQHAASLVFEAIYLKAKSQQKLGKFVDAANDCKRILDAVEKIFYQGIPNFQVDNKLQEIISHAVELLPELWKQGGCYDEAISAYRRALLSQWNLDNDCCSRIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILIRKFCAGNIKWDPSIMEHLTFALSVCSQTSVLAKQFEDLMPGVYHRIDRWNSLALCHCAAGQNVSALNLLRKCLHKHERPDDLTLLLLAAKICSEVPYLASEGVVHAQRAISNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSRLQSKALESLEEATRLEKNNSDLIFELAVQYAEHRNLTAALRYARHFFNETGGSIVKAWILLALILSAQQRFAEAEVVTDAALEQIVRWEQGPLLKLKAKLKISQSKAMDAIETYRYLLALVQAQKKSFGSFRVSSKVDDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKQYSAAILHTEGILFEGRGQNQEALNTTINAILLEPNHVPSKILMSALIQKMGSKALAAARSMLSDALRIEPTNRMAWYYLGLVHKNDGRMADAADCFQAASMLEEFDPIESFSTVL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01659 694 Gene3D Tetratricopeptide repeat domain 457 687 IPR011990 GO:0005515
Trre9g01659 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Trre9g01659 694 Coils Coil 401 421 - -
Trre9g01659 694 Gene3D Tetratricopeptide repeat domain 287 456 IPR011990 GO:0005515
Trre9g01659 694 Gene3D Tetratricopeptide repeat domain 16 201 IPR011990 GO:0005515
Trre9g01659 694 SUPERFAMILY TPR-like 496 679 IPR011990 GO:0005515
Trre9g01659 694 Pfam Tetratricopeptide repeat 635 678 - -
Trre9g01659 694 SUPERFAMILY TPR-like 118 444 IPR011990 GO:0005515
Trre9g01659 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Trre9g01659 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Trre9g01659 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Trre9g01659 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Trre9g01659 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Trre9g01659 694 SMART tpr_5 302 335 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01659 Trre-Chr9 14518159 14522772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01659 11 694 Calmodulin-binding Proteins AT2G43040 70.015 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01659 K21843 - gmx:100814609 1157.9